RNA id: TU171327


Basic Information

Item Value
RNA id TU171327
length 1504
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00012374
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17126013 ~ 17129339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAACCACAGAGTGTCCACTAGCTCCCACGCCTCTGCAGTGAGGCTGTTGCCGAGGCCCTATTAACCATTCACCAACAGCACAGAGCCAGAGCACAGCGTGAGAGACACGgaccgactgacacactgacggaatgaatgaatgaatgactgcaagtgtgtgtctgtgaatgagTTTATTAGTGCCTGTATaacttaaatgtgtgtgtgtggatgtggatgtctctgagtgtgagtgtgtgtacgtATGTGTATctctctgagtgtgtgtgtgtgtgtgagattgtaTCTCTcggagtgtgagtgtgtgtacgtATGTGTATctctctgagtgtgtgtgtgtgtgtgagattgtaTCTCTcggagtgtgagtgtgtgtacatgtgtgtatctctctgagtgtgagtgtgtgtgtacatgtatgtatctctgagtgtgagtgtgtgtacgtgtgtgtatctctctgagtgtgtgtgagtgtgtgtgtacatgtatgtatctCCGAgtgttagtgtgagtgtgtgtacgtATGTGTATCTctctgagtgtgagtgtgtgtctctctgagtgtgagtgtgtgtacgtgtgtgtatctcactgagtgtgagtgtgtgtgtacatgtatgtatctCTGAgtgttagtgtgagtgtgtgtacgtATGTGTATCTctctgagtgtgagtgtgtgtctctctgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagattgtatctctgagtgtgagtgtgtgtgtgagttaaTATCTcttagtgtgagtgtgtatccAGGTGTACAATGTCACCTTGTCAACTACAGCTatcatggggaaaaaagaacacaaagcaGAAAAAGTAAATTATCTATTTTCCGCTGACCTCGGATATTCCAAGGGATAGGTAGAGTATAaagccagagagagggagagcagggagagagagagagacctgtcACTcctgccactgctgctgctgctgctgtctttTTTCAGGGCTCGGAACGccaaaccaccaccaccacacaaaCAACCACACAAGCCACCTCACCGCACCGCTATGGAGGCAGCTATAAACACACTGGTGGGCCAGTTCAAGACCTTCGCAGGGGGCGACGGGCGCGGCGACACGCTGAGCCGAGACGAGTTCCGCAGCCTGGTGTCCTCGCAGCTGCCCACCTTTGTCAAGAACTCCAGTGACCCGGCAGCGGTGGACCAGCTCATGAGCTCATTGGACGAGAACAATGACGGCGAGCTCACCTTCCTGGAATTCTGGCAGTTGATTGGCCGTCTGGCGAGCAAGCAGGCGGGCTTCAGCTAATTGTGCCTGGGAGCTGGCTGCCATGTGGGGaactcactctgtctctctctctctgcctgttccactgagatggctctcTTGTGTCGTGGCTTTGTTTGGTTACTGAATAAATGACCACCTGGTCTACACTATGGGAAGATTTAAAGTGTCTCTGTGTTCCTCCTTGGGGTGGGTCCAACAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171278 lncRNA upstream 147800 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 168718 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 211318 16912235 ~ 16914695 (+) True G136286
TU171211 lncRNA upstream 218908 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 294211 16829050 ~ 16831802 (+) True G136236
TU171352 lncRNA downstream 35637 17164976 ~ 17172106 (+) True G136351
TU171462 lncRNA downstream 160806 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 171188 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 201455 17330794 ~ 17332570 (+) True G136457
TU171486 lncRNA downstream 210239 17339578 ~ 17340736 (+) True G136458
AMCG00012368 mRNA upstream 62960 17056530 ~ 17063053 (+) True AMCG00012368
AMCG00012370 mRNA upstream 74967 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012367 mRNA upstream 96925 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012369 mRNA upstream 128949 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012366 mRNA upstream 141019 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012375 mRNA downstream 3223 17132562 ~ 17133006 (+) True AMCG00012375
AMCG00012376 mRNA downstream 30106 17159445 ~ 17168083 (+) True AMCG00012376
AMCG00012380 mRNA downstream 55891 17185230 ~ 17193976 (+) True AMCG00012380
AMCG00012381 mRNA downstream 67100 17196439 ~ 17198701 (+) True AMCG00012381
AMCG00012378 mRNA downstream 92044 17221383 ~ 17222414 (+) True AMCG00012378
TU171279 other upstream 125924 16963330 ~ 17000089 (+) True G136296
TU171236 other upstream 250413 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 258565 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 262420 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 428622 16674279 ~ 16697391 (+) False AMCG00012349
TU171339 other downstream 435 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 641 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 102037 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 102037 17231376 ~ 17264404 (+) False G136341
TU171552 other downstream 330145 17459484 ~ 17466059 (+) True G136499

Expression Profile