RNA id: AMCG00012377


Basic Information

Item Value
RNA id AMCG00012377
length 2150
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00012377
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17255412 ~ 17258599 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagtgtttctcagtgtgcAAGAAAAACGGCCTCCCCTTTAAAGGAAGCCCCTTTAAGAAGATCTCACCTGGACACACCTGCAGCCAGGCCCTCCCCCACCGAAACCTCCACAGAAACAAGCCCGACAGAGAGGGGCAATGGCGGCCTGTGCGGAGCAGCTGAGCCGCTGACTTTTGAGAGATCCTCGAGAACCAGGAACGAGCGAGAGGGGAGGGGACGGACACCTTTGGCACAGACGTACAGACGCTCCtgtcctaaaataaaaatactgatgTACCCCGATTCAGGGCCAACCCCCCCCACGGAGGACGAGGGGTTCCCTGAAAACATGGGGACAAGCCCTGTACCCCACAAAACAGCACAGGGgggacaggaggaggaggaagaggaggaggaggaggaggaggagaagacgacgacgacgacgacagGGGAAGAGAGGAGCGGGAAgtgtgaagaggaggaggaggaggaggaggatgtgAGTTTGGCATGCATGGAACCCAGTACTCTACAGTGGAcagagaagaaggaggaggaggaggaggaggaggaaaaagaTTACGAAGATGAAGAGAGAACGCGCTCTCTGGAGTCTCTGGGCGCCTCGCACAAGGAGATGGACAAGAAGGAGAGGTTGGGGAAGATGGACGAGCTGGGAATAGAGATCGAGGAGGGGGAGAACTGCCTGCCGGAGACGGCGGCTGCCGTCTTCCACCCCAGCGTGCAGATCGTGCACCCCGGccgcgaggaggaggagggggacgCCGGCTGTGGAGACTCTGAAAAGAGCCCCTTTCTCCGCCCCCAGGGGACCCTGCCTGATGGATACTTCCCGGACTGGCATGAGGAGGACCGGCACCAGACAGGGGGCTGCACGTGTTGCAGCAGGGGCTGTTGCTGTGGTTATGACGCTCTGAAGGCGGGGGCAGGGCTGATGTCGGCAGGGCTGCTGTGCCCCCTGCTGCTGTGGGGGGGGTATGCGCTGCTGCCCTTTGACGCCCCACTGCTCAAGGATGCCCCCCAAAGGCTGGtctacacactgcactgcgCCACCTTCGCCACCGTGCCCATCCTGCTGGgtgtgcTGGTGCAGGGTTTGTGTCGGCTGTGCCCCCCGTCTCTCACCCTGCGCCGAGAGGACGACAAGGAGCCCACGCTGCACCAGCGTTTCGTCAACGACTCGGTTGGGCTGTTCCTGCTGTTCTTCCTGAACCTGGCGGCCCTCTCCACCTACCTGAGCCAGGAGCACCTCAAACTGGTACCCCTTCTCACCAGCCTGTTCGCCATGGGCAGGTACCTACTCCGCCTCTACTCCGGGTCTGCTCCGCTGTTGGTGTACTGGCTGGCCTTCGCGCTGGGCAGCAGTTTCCGCAGCCTTGGTTTCGGCCTGACCTTCTTCCCCATCCCGGCGATGCTGGTGGCCAACATGTACTTCATGTTCGTCCTGGAGGGCAGCAGCATCTTCGCTCTCGAACCCGACCCTGACGCCCCGGGCCCCACTCAGGCCCCCAGCCCCGGTAAACAGAGGTTCTGGGGCTGATTTCCCCAAGGTCAAGAACCAGAAGAGACTAGCTTTTGCTGTGAAGGGTAAGCAATCTTGGCtattccagtccagtccagtccacacAATCAGTCTATATGATAAATTGAGCTTCAGCAAGGACCCCATTAAGCAATTAAAGGGTGAATCGTGGTGAATGGAGCGCTGACTGGATTTAGACACTGGTGCAATCCACtggagtggactggactggaagTGCCAGGGCTGGAGATGCCAACTATAGGCTGGTGAAGGACGGGGCAGCTGCCCTGACACTGTGACGTGGTCTGTGGCGTAGGTTACAGTTATTTAGTGCAATTCTGTCTGCAAGTAGAAAAGGAAATTGCAAGTTACACctgtacatttttctatttttattcctttttaaatatagatatactTGTTCGCAGGTTTATGTGATGATCGTGTTCGGTCGCTGATacgttttttaaattttcattttgtttccttattcttgttctttcatttttttttcttaaagataatgttttgtttaaaagaataaatgctTCAAGATCAATTCTTCTTGGGAGATGATGGTGTCAAAATCACACTTACATACAGCAgagtctccagccctggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171337 lncRNA upstream 46053 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA upstream 83306 17164976 ~ 17172106 (+) True G136351
TU171278 lncRNA upstream 277199 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 298117 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 340717 16912235 ~ 16914695 (+) True G136286
TU171462 lncRNA downstream 31546 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 41928 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 72195 17330794 ~ 17332570 (+) True G136457
TU171486 lncRNA downstream 80979 17339578 ~ 17340736 (+) True G136458
TU171518 lncRNA downstream 126337 17384936 ~ 17388799 (+) False AMCG00012387
AMCG00012379 mRNA upstream 12583 17238280 ~ 17242829 (+) True AMCG00012379
AMCG00012382 mRNA upstream 20478 17231345 ~ 17234934 (+) True AMCG00012382
AMCG00012378 mRNA upstream 32998 17221383 ~ 17222414 (+) True AMCG00012378
AMCG00012381 mRNA upstream 56711 17196439 ~ 17198701 (+) True AMCG00012381
AMCG00012380 mRNA upstream 61436 17185230 ~ 17193976 (+) True AMCG00012380
AMCG00012389 mRNA downstream 10467 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012388 mRNA downstream 110664 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012386 mRNA downstream 116361 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012387 mRNA downstream 126961 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012395 mRNA downstream 238855 17497454 ~ 17504572 (+) True AMCG00012395
TU171333 other upstream 20463 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 40529 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 120582 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 126073 17126013 ~ 17129339 (+) True AMCG00012374
TU171279 other upstream 255323 16963330 ~ 17000089 (+) True G136296
TU171552 other downstream 200885 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 216049 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 258851 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 288769 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 387042 17645641 ~ 17646905 (+) True G136566

Expression Profile