RNA id: AMCG00012378



Basic Information


Item Value
RNA id AMCG00012378
length 447
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00012378
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17221383 ~ 17222414 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCAAAACTGGAGACGGTGGTGCGCTCTCTGGTGGAGCTATTCGAGGAGCATGCAGGGCAGGACGAGCACAAGAACCAGCTGAGCGGTGCCGAGCTCCAGCAGCTGCTCAAGACCGAGCTGCAGTCCCCGGAGTTTAAGGCAAGCAGCCAGGACAGGGCGCCCCTGCAATGGGACAGGGCCTGGGACAGCTCACCACAGGGCGAGATGTCCGCAGAGAGCAAGGCCATATCCAGATCAAGAGAGTGCTCGGGTGGGGGGCGCAGAGCAACGTGGGTGGCGACGCACATCGGCGATCTGTGCCATTTCAACCCAGAGGATGTGGACGCGGTCATGGCAGAGCTGGACAAGAACCACGACGGAGACGTCAACTTCCACGAGTTCTGCCGATTCGTGGAGAAGCTGGCCCACTGCTACCGACGCAAGTGCCAGGGCAAGGACAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171337 lncRNA upstream 12024 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA upstream 49277 17164976 ~ 17172106 (+) True G136351
TU171278 lncRNA upstream 243170 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 264088 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 306688 16912235 ~ 16914695 (+) True G136286
TU171462 lncRNA downstream 67731 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 78113 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 108380 17330794 ~ 17332570 (+) True G136457
TU171486 lncRNA downstream 117164 17339578 ~ 17340736 (+) True G136458
TU171518 lncRNA downstream 162522 17384936 ~ 17388799 (+) False AMCG00012387
AMCG00012381 mRNA upstream 22682 17196439 ~ 17198701 (+) True AMCG00012381
AMCG00012380 mRNA upstream 27407 17185230 ~ 17193976 (+) True AMCG00012380
AMCG00012376 mRNA upstream 53300 17159445 ~ 17168083 (+) True AMCG00012376
AMCG00012375 mRNA upstream 88377 17132562 ~ 17133006 (+) True AMCG00012375
AMCG00012374 mRNA upstream 92229 17127812 ~ 17129154 (+) False AMCG00012374
AMCG00012382 mRNA downstream 8931 17231345 ~ 17234934 (+) True AMCG00012382
AMCG00012379 mRNA downstream 15866 17238280 ~ 17242829 (+) True AMCG00012379
AMCG00012377 mRNA downstream 32998 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012389 mRNA downstream 46652 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012388 mRNA downstream 146849 17369263 ~ 17371553 (+) True AMCG00012388
TU171339 other upstream 6500 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 86553 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 92044 17126013 ~ 17129339 (+) True AMCG00012374
TU171279 other upstream 221294 16963330 ~ 17000089 (+) True G136296
TU171236 other upstream 345783 16871838 ~ 16875600 (+) True G136258
TU171333 other downstream 8962 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 8962 17231376 ~ 17264404 (+) False G136341
TU171552 other downstream 237070 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 252234 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 295036 17517450 ~ 17518398 (+) False AMCG00012401

Expression Profile