RNA id: AMCG00012383


Basic Information

Item Value
RNA id AMCG00012383
length 1167
RNA type mRNA
GC content 0.68
exon number 6
gene id AMCG00012383
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17264763 ~ 17267311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGGAGGGGATTGACGCAGGTGTCAATGGAGCTGAACCCGGGTGCGAATGGCAGCGTGGGGCTGGACCTGCTGCACGTGCGGGCGGTGGGGCCCGGGGACACACTGCACTGGGTGCTGGGCAGTCAGGGGCCCCCGGCGCTGCTGCTGGTCCACACGGACTCGCCCAACTCCAGCCTGACGGTGGACTGGCCCCGGCTGCTGTCGCGCAACTCCTCGGGCAGCCTGAAGGTGGAGCCGCAGAGCAGCGTGCGGTACGCCAGCGCCCTGCTCTTCAGACGGATCTGGGAGTACGACGACACGAACGACACCGCTGACCCCACCCACGCACCCCCCTCCAGCTTCCTCCCCCCCTACGAGCTGGACCAGTTCTCCTGGGACGACCTCAATCGGACCCTGAACCGCTCGTCGCTCTCCGCCCAGCTCTGTGGCCGcccctcttcttcctcctctgccAGCGCCGACACCTTCCAAAACGGCTCCCTCTGCCTGGAGTTCTCTGCCTTTGACTCGTGGGGGCGGAGCTCGGCCTGGCCCCGCCTCCTGCACAGCGCGAACACCTCCCAGCTGCGCGTGCTGATCAAAGGGGTGGCGGTGCGGTCCAACCACTCGCGCCTGGTGCTGGAGCTGGCGGCCGTGGTGCCCCGGGACCAGCCGAGCCGCGTCGACACGCTGCACTCCATCGACGATGAGTACTCGCCCACCATCTTCCAGgTGTGTCAGTGGGTGACGCTGAGTCCCGGCTCCAGCTCCGCAGCCCTGGGCTTCTCTCAGTGGAAGCCGGTGGGCTATCGCTCCGAGAAGCTCCTGACCGAGTTCGCCACGCCCGCCCGGCACTCTGCCCCGGAGCCACGCCCTGCCCCAGCCCGGCCCAGCCTGGCGCGGGCGTTTTTTGGGGAGCAGCTGGGCGAGGGGTACCAGGTCAGCGGGCTGAACCTGACCTTCGGCATCGCGGGGGAGCCCTTCTACAACAGCACCCAATACCTCAGCTGGACTGTTCTGGTGGGTGTGGGCTCTCCTCCGTGGGACTCGTTCTCCGTTCTCGTTCTGTCCATCATGGCCGTGGCCCTGGGCACCCCTGCGCTGCTGCTCCTGTTGGGCGGCGTCTGCGTGTGCGTGAAGCGGAAGGGACGGGCTCCCCCCCAGTACGAGCCAATCAACTGA

Function

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171449 lncRNA downstream 2869 17259988 ~ 17261894 (-) True G136423
TU171427 lncRNA downstream 22757 17233928 ~ 17242006 (-) False G136408
TU171437 lncRNA downstream 53713 17208778 ~ 17211050 (-) False AMCG00012385
TU171431 lncRNA downstream 66061 17197235 ~ 17198702 (-) True G136411
TU171428 lncRNA downstream 70781 17192741 ~ 17193982 (-) True G136409
TU171461 lncRNA upstream 21788 17289099 ~ 17290083 (-) True G136435
TU171463 lncRNA upstream 22829 17290140 ~ 17290396 (-) True G136437
TU171477 lncRNA upstream 35615 17302926 ~ 17310050 (-) True G136450
TU171500 lncRNA upstream 47597 17314908 ~ 17318479 (-) True G136470
TU171498 lncRNA upstream 83509 17350820 ~ 17351911 (-) True G136469
AMCG00012384 mRNA downstream 10249 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 47124 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012373 mRNA downstream 182556 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 185556 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 274654 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012390 mRNA upstream 77043 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 113345 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012393 mRNA upstream 150188 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012394 mRNA upstream 192612 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 208063 17475374 ~ 17483359 (-) True AMCG00012392
TU171426 other downstream 21936 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 49800 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 53713 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 61530 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 130856 17093499 ~ 17133907 (-) True G136378
TU171572 other upstream 112869 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 149263 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 236307 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 419021 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 453415 17720726 ~ 17724068 (-) True G136666

Expression Profile