RNA id: TU171433


Basic Information

Item Value
RNA id TU171433
length 762
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00012385
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17208778 ~ 17217639 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGAGGGATCGTGTAGCTATTTGGCATCGGCTTCACATAATGTCGGGATGTCAACAGATCCCGACCTCACCCCTTCCAGGAAGGAGGATCCCCACTCCAACCTCCCTTCCCCTCCCTAGCGCTCAGAGCTATATATAACGCAGGACAGAGCGAGTCTCACTAACACAACCAGCTTTTCTCATTCCTACCTGAGCAGactCCACTGTCCTACACTGACCATGTCTCTGGCTGACGCTGCACGCATCGTGGGCGAGGTGTTCAAGAAATACGCCGGGGAGGACCAGCACAAGAACTCACTGAGCCCGGACGAGCTCAAGAAACTGCTGCAGGCTGAGTGCAGCAAGAAGggaTCAACCTGCACTTTGACGTTGGACGAGGTGATGAAACGTCTGGACAACAACAAGGATGGACAGATCACCATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCAACTGtgatgagacagagagagacactccCACGTCCCTCAAAACAGAGAGACTGGAGACAGACAAAGGAGAAGGAAGTGGGaagtttttttctgtaaagaaacaaagatgaaaataaaGATGGTTTGAATTCAAAATCAGTTCTGTCTCCTGTGATCTCTGTACTGAGGATTGACACAAATCTGTCCGTCTGCCTGCCTTTCTGTCTATCCATCCAGATAGCTGTTATTTGGCCatttttctgtgtatgtatgtatgcatgcatgtaccCACCACACAAGAGGTGGCAAAGGCTGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171437 lncRNA downstream 2794 17208778 ~ 17211050 (-) False AMCG00012385
TU171431 lncRNA downstream 15142 17197235 ~ 17198702 (-) True G136411
TU171428 lncRNA downstream 19862 17192741 ~ 17193982 (-) True G136409
TU171402 lncRNA downstream 65758 17145422 ~ 17148086 (-) True G136391
TU171386 lncRNA downstream 79937 17132237 ~ 17133907 (-) False G136378
TU171427 lncRNA upstream 18965 17233928 ~ 17242006 (-) False G136408
TU171449 lncRNA upstream 45025 17259988 ~ 17261894 (-) True G136423
TU171461 lncRNA upstream 74136 17289099 ~ 17290083 (-) True G136435
TU171463 lncRNA upstream 75177 17290140 ~ 17290396 (-) True G136437
TU171477 lncRNA upstream 87963 17302926 ~ 17310050 (-) True G136450
AMCG00012373 mRNA downstream 131637 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 134637 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 223735 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 247973 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 262013 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012384 mRNA upstream 31127 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 49800 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 129391 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 165693 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012393 mRNA upstream 202536 17417499 ~ 17423232 (-) False AMCG00012393
TU171434 other downstream 2794 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 10611 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 79937 17093499 ~ 17133907 (-) True G136378
TU171188 other downstream 514053 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 514734 16698642 ~ 16699110 (-) True G136222
TU171426 other upstream 18965 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 165217 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 201611 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 288655 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 471369 17686332 ~ 17688512 (-) True G136625

Expression Profile