RNA id: TU171437


Basic Information

Item Value
RNA id TU171437
length 931
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00012385
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17208778 ~ 17217639 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTACACTGCAGGCTGGTTTTGCTGTGAACATTACAAATCTACCCCATAGCTGTTAgtattatgctttgtattttaccTTTAAATACCTGAGTAATTCTGCTATGACCTGATTGTAATCGAGCAAAATACCATGCGCACTTGTAATTCAGACTCACTCAAGACCACACCAGAGAAGAAAAACCTGCTACCATTGGCCATGATGCAACCATGGTAATTATGTGTGGttaatgacaaacaaacacacacacacacacacacacacacacacacactcacacaatgaCACAGTAACAAGCAGTATGGTTTGGCTATTTGGCATCGGCTTCACAGATCCCAACCTCACCCCATCCAGGAAGGAGGATCGTCACTCCACGCCACGCCACCCCACCCTACCCTCCCTAGTACCCAGAGCTATATATAACGCAGTGCTGAGAGAGTCTCATTCACACAACCAGCTTTTCTCATTTCTACCTGAGCAGactCCACTATCCTACACTGACCATGTCTCTGACTGACGCTGTGCGCATCGTGTCCGAGGTGTTCAAGAAGTACGCCTCTGAGGACCAGCAGAAGGACACGCTGAGCCCAGATGAGCTCAAGAAACTGCTGAAGGCTGAGTGCAGCAAGAAGggAACAGACTGCAGTTCAAAGTTGAGCGAGGTGATGAAACGTCTGGATAACAACAAGGATGGACAGATCGACATCGTGGAGTTCGGCACTCTGATCGGCATGATGGCCAAGCGaatgtgagagaaagagagacaccaCCCCCCGTCTGCTGGAGAGTGAGGgatggagggaaggagagggagagaggagggagagaagggtgGAGTTTATATCttctctgtaaaaaaacaaagatgaaaataaaGATGCATTGGAATTAAAATCAGCTGTTTCCTGTTGTCTCTGTACTGAGGATTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171431 lncRNA downstream 10076 17197235 ~ 17198702 (-) True G136411
TU171428 lncRNA downstream 14796 17192741 ~ 17193982 (-) True G136409
TU171402 lncRNA downstream 60692 17145422 ~ 17148086 (-) True G136391
TU171386 lncRNA downstream 74871 17132237 ~ 17133907 (-) False G136378
TU171407 lncRNA downstream 79479 17126206 ~ 17129299 (-) True G136392
TU171427 lncRNA upstream 22878 17233928 ~ 17242006 (-) False G136408
TU171449 lncRNA upstream 48938 17259988 ~ 17261894 (-) True G136423
TU171461 lncRNA upstream 78049 17289099 ~ 17290083 (-) True G136435
TU171463 lncRNA upstream 79090 17290140 ~ 17290396 (-) True G136437
TU171477 lncRNA upstream 91876 17302926 ~ 17310050 (-) True G136450
AMCG00012373 mRNA downstream 126571 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012372 mRNA downstream 129571 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012371 mRNA downstream 218669 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 242907 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 256947 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012384 mRNA upstream 35040 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 53713 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 133304 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 169606 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012393 mRNA upstream 206449 17417499 ~ 17423232 (-) False AMCG00012393
TU171432 other downstream 5545 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 74871 17093499 ~ 17133907 (-) True G136378
TU171188 other downstream 508987 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 509668 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 775965 16431352 ~ 16432813 (-) False AMCG00012340
TU171433 other upstream 2794 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 22878 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 169130 17380180 ~ 17381595 (-) True AMCG00012391
TU171593 other upstream 205524 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 292568 17503618 ~ 17503986 (-) True G136544

Expression Profile