RNA id: AMCG00012386


Basic Information

Item Value
RNA id AMCG00012386
length 1730
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00012386
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17374960 ~ 17380121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGAGAGAGTTCTGCGTTTCCTTGTCCACGCCGCCCGAGATCTGTACACGCACCCATAGCTGCTAATCGTCGATATTGTTGATTTTAATCgagatttatttacattttcaatcacCCAACTATTCGTGTTGTTTCGTCCTATGGATTTCCTGCAGGTGCTGTCATGGGCTTGTATAGTGTTCACTCTGGGCATGTTCTCCACTGGACTTACTGACCTTCGGAGAATGGTGTCCAGTGGCAGTGCCGAAAATGTCCAGTTCCTGCCCTTTCTGACCACTTGCCTGAAtaaCCTGGGCTGGCTGTACTACGGGACTCTGAAGAGGGACGGCACCCTGGTCATCGTGAACAGCATCGGAGCGGTGCTGCAGGCGGTCTACATCTCGGCGTTCTGCctgtacacacagcacaggAGGCGGGTGCTGATGCAGACGGCGCTGGCGGCGGCGGggctgtgtgtgggggtgcTGTACTTCACGCAGCTGCTCTCGGACCCGGACACTcgcctcagccagctgggcctgACCTGCTCCCTCTTCACCATCAGCATGTACCTGTCACCCCTCACCGACCTGGTGCAGATCGTGCGCAGTAGGTCAGTGAAGTGTCTGTCCTACTCGCTGACTGTGGCCACATTCCTGACCTCCACTTCCTGGACTCTGTATGGACTGCAGCTGCAGGATCTGTACATCatggttccCAATACTCCAGGCATAGTGACCAGCCTCATCCGATTCTGGCTGTTCTGGAGGTTCACGCCCAGCTCCCCAGAGAAGTTCTCCTATAGGCCGCTGCAAGCCTGAGGGGCGGGGCTACCCGTCGCAATAGAAAGGACTGCATCGCCAGCGCCGTGACCTCTGCCCTCTGACCTCGGAACTCCCGCGAGGTCAACTCCGTGGCAACACGCAGAGATTCTAGAGGCCTCTGCAGTTGCCTGTAGCGACAATCACTACTCCTTCAACTGCCAAAGATTGATGAAcgaatgacacacacacacacacacacacacacacacagatactccaatacacactgacacacacacacagatatatatacacaaatattcaCAGACACCCCAACATGGACACGCAACTTTCTCCCAAATCCACTGTTATACTCCCAGCCCcccacacactacacacacacacaccacactgtgtgttaataataaatgtaaatagtttttctaaaagtatatatatatatatatatatatatatatatatagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtattatgcAATCGTTTACAATGTGCAGTGTAGCTCCAGGTCTGTCTGTTCTTCcttaacctttttattttattcgaCTTTTTCGACTTTTACTCCACTTTGCATCTCTGAGAGAAATTGAATTTGTACTGGACCGTAATTGGCATTGAAGAGATTAGAAGCTGAAGACGGCAACACAGGGCCACTGTCCTCCGACTCGTGTCCGAACCAGCCCGTGTGAACATGACCGACAATAAAGTGCCTTCTGTTGTTATTGCAAACaaaatctgtctgtctgtctctccagctcccttTCTCCCCATCTGTCGTTCTCGCACCCTCTCCTCCAGTTCTCTGGTGGAAATCATTTCGCTCCTcgctccctctgtctctctctccatctgcccCTCTTCCTTGGTCTGCCTTTCGTTCTTATGTTCCTTCTCcatctgcctccctctctccctccctattatacaatgtaaaatc

Function

GO:

id name namespace
GO:0008643 carbohydrate transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171486 lncRNA upstream 34224 17339578 ~ 17340736 (+) True G136458
TU171485 lncRNA upstream 42390 17330794 ~ 17332570 (+) True G136457
TU171471 lncRNA upstream 69961 17300527 ~ 17304999 (+) True G136444
TU171462 lncRNA upstream 84431 17290145 ~ 17290529 (+) True G136436
TU171352 lncRNA upstream 202854 17164976 ~ 17172106 (+) True G136351
TU171518 lncRNA downstream 4815 17384936 ~ 17388799 (+) False AMCG00012387
TU171519 lncRNA downstream 5160 17385281 ~ 17388799 (+) False AMCG00012387
TU171517 lncRNA downstream 5195 17385316 ~ 17388799 (+) True AMCG00012387
TU171521 lncRNA downstream 21898 17402019 ~ 17402360 (+) True G136486
TU171536 lncRNA downstream 31640 17411761 ~ 17476097 (+) False G136489
AMCG00012388 mRNA upstream 3407 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 85065 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 116361 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012379 mRNA upstream 132131 17238280 ~ 17242829 (+) True AMCG00012379
AMCG00012382 mRNA upstream 140026 17231345 ~ 17234934 (+) True AMCG00012382
AMCG00012387 mRNA downstream 5439 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012395 mRNA downstream 117333 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 129251 17509372 ~ 17522821 (+) True AMCG00012401
AMCG00012396 mRNA downstream 149652 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 172465 17552586 ~ 17578771 (+) True AMCG00012397
TU171338 other upstream 110556 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 140011 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 160077 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 240130 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 245621 17126013 ~ 17129339 (+) True AMCG00012374
TU171552 other downstream 79363 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 94527 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 137329 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 167247 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 265520 17645641 ~ 17646905 (+) True G136566

Expression Profile