RNA id: TU171518


Basic Information

Item Value
RNA id TU171518
length 2518
lncRNA type sense_over
GC content 0.52
exon number 5
gene id AMCG00012387
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17384936 ~ 17388799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTCTCCGCACTCGTGTGTAGTCTACAGCCGCAGCTCCTACCGTGCCACAATCACCACGgggtctgctgctgctgcgatCACGCCTTTCagcgggagagagggagcgtgTCCCCGTGTGTGAGCGTGTCTCAgcgtctctgtgtgtggggTGGGTCCACGGAGCCGGTCTGTCTGACCGAACGTAGCGTCTGGAGTCGTAGGAGCCAGAGGGgtTCCTGTGGGACGAGTACCGCGTCTCCGTGCAGCTCAACGACTACCTGGACATTGTGTGCCCGCACTACGCCCACGGGGCCGTGCCGTCCAGTGAGGCGGAGCGCTACGCCCTGTACTCCGTGGAGCGCGACGACTTCCTGGCCTGCCGTGCCGGGGGCCCCCAGGAGCTGCGCTGGGAGTGTGACCGGCCCTTCGCCCCCCACGGGCCCGAGCGCTTCTCCGAGAAGTTCCAGCGCTACACCCCCTTCACCCTGGGCAAGGAGTTCCGGCCTGGCGAGACTTACTACTACGTGTCCAAGCCCATCCATCACCACGGAGAGAGCTGCCTCAGGCTGCAGGTTGAGGTCGTTGCAAAGACAGGAGCTCAGGAGCCCCGAGTGGGAGGTGGGGTACACAACCCTGTGACCAGACTGCCTGCAGacgACCCTGCAGTGGTCCTACCGGACGTCTTGAAGAGTGTGGGCAACAGCTCCGGCCTCCGCGCCTTCCCGCTCTCGCTCCTCCCTTCCATCCTGCTCTCCGTGCTCCTCCTCTCCCTGTTACTGTGAGGATGAGGCCTGGAACTTGAGgggggaaaagaagaagaagaagaagaagaagatatAATAACACTACGGTGTCCTGGGAGGGCCACACTGAACTGAACACTACTGTCAGGCCAGTGCTGGACATTGGCGCGCGcacagaaggagagaaagatggagagagagagggcccaaACCCTCCCGCTGTGGCTGGAATGCTGCTCGGAGCTCTTGTGCTCCTCTCCGCACATCAGAGACAGAAACCGGACTGtcacccccacccacacacactcgcCTTCAACtcgagagagggagggaactGCCATCCATCTTCTCATCACCCCTCCTTCCCTGAGAGAGCGGCGCACAGACTGCAGAGAACCAGTTCTATGGCTCCAAGCCGCCGCTTGCgtttcatttgaattttttgttgtgttttgtggtcGTCCTCCTCGCTGCTTCGCTcgtttttgatttttgtattttgtttccgTGCGTTTTGGCTTCTGACGCCAGGAGAGACTGTTAAAACAATTGACGTGCAGCCCagtatactacactacactacagtacactacattTTACTACAGCACAGTTCAGTACACATTTTACTACaatatactacactacagtTCAATATACTACACTTGTGTCCACACATCGTCACTGTTAACAGCTCTgatcgtttttgttttttttcagttctcGTCTTTGAAGCCAAAGGAATTCATCTCAACCTGCTTTATcggtttatacatttttttgtttttattattattttctctagACTAAGGTGTATATCCTAATGTAGCAcatggaggggagagagggagagctggAGATTAGCTTTTCACTGGATAACTGTGGGTTAGTTGATGGGGCTCTGGCAGTGAGTTTTGTttggtctgtgttttgtttgtcgGTCTTTATTgtcacagcaaacaaacaaacacacacaacggCAAAGCAAAGCTGGGTTTTACTGCCAGAGatcgggggaggggggagagaaggaCCGGAAAGATTCTGCCAAAAACTGTGAGAAGAATTCATTAGAGCAGGGAAGCTGGTCTCCCTACTGTAGCACCTCCttacaccccccacacacactgacactctgacactgAGAGGCACGCTGACACggagagagacgcacactgacacgcttacatggagagagacagagacacacactgacacgcttACATGGAGAGAGCCACTGAGACGCACGCTGACACTGATACACAAACAGACGCAGAGAGAGACCCTCTTGAGACACGCTGACACAAAgagacactgatacacacactgacacgctgacacagagagacgcacactgacacacacaccgcACAGAGTCACTCACCTTGCAGGCTGAGGTGAAATTTGGGGGACTGCTGTGTGGTGTGGTGGGGGTTGTTTAAGGACAGACGCAGAGACGACGGACGGACGCCGGGTCCAGATAGCTGCAGCACATCCGCTCCAAGCCAGATGCATTTCAGACACGGCGTATTAATGAACTAATGGAATTAATTGGCTTCAGCGGTTCGTTGATGCACTGAACAGGTGACCGCTGTCTGACggggctgtctgtctgtccgtctcatgttttctctttttttttttttttttttttggtttgtttttgtaaaggttgtatgtaaactgtaaaatgtcatgtaaaaatgtgtacatatatatatatgaatatataaaagtgATACATTTGataactggaaaacaaaaatgcttaaaaaaatttaaataaaaaagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171486 lncRNA upstream 44200 17339578 ~ 17340736 (+) True G136458
TU171485 lncRNA upstream 52366 17330794 ~ 17332570 (+) True G136457
TU171471 lncRNA upstream 79937 17300527 ~ 17304999 (+) True G136444
TU171462 lncRNA upstream 94407 17290145 ~ 17290529 (+) True G136436
TU171337 lncRNA upstream 175577 17127155 ~ 17209359 (+) False G136341
TU171521 lncRNA downstream 13220 17402019 ~ 17402360 (+) True G136486
TU171536 lncRNA downstream 22962 17411761 ~ 17476097 (+) False G136489
TU171542 lncRNA downstream 30416 17419215 ~ 17462685 (+) True G136490
TU171538 lncRNA downstream 45430 17434229 ~ 17476097 (+) False G136489
TU171524 lncRNA downstream 85849 17474648 ~ 17476097 (+) True G136489
AMCG00012386 mRNA upstream 4815 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012388 mRNA upstream 13383 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 95041 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012377 mRNA upstream 126337 17255412 ~ 17258599 (+) True AMCG00012377
AMCG00012379 mRNA upstream 142107 17238280 ~ 17242829 (+) True AMCG00012379
AMCG00012395 mRNA downstream 108655 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012401 mRNA downstream 120573 17509372 ~ 17522821 (+) True AMCG00012401
AMCG00012396 mRNA downstream 140974 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 163787 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012406 mRNA downstream 192577 17581376 ~ 17598072 (+) True AMCG00012406
TU171338 other upstream 120532 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 149987 17231376 ~ 17234949 (+) False G136341
TU171339 other upstream 170053 17129774 ~ 17214883 (+) False G136341
TU171331 other upstream 250106 17129980 ~ 17134830 (+) True G136341
TU171327 other upstream 255597 17126013 ~ 17129339 (+) True AMCG00012374
TU171552 other downstream 70685 17459484 ~ 17466059 (+) True G136499
TU171527 other downstream 85849 17474648 ~ 17476097 (+) False G136489
TU171630 other downstream 128651 17517450 ~ 17518398 (+) False AMCG00012401
TU171641 other downstream 158569 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 256842 17645641 ~ 17646905 (+) True G136566

Expression Profile