RNA id: TU171572



Basic Information


Item Value
RNA id TU171572
length 833
RNA type TUCP
GC content 0.52
exon number 2
gene id AMCG00012391
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17380180 ~ 17381595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCCCGAGCCGGGTGCTAAATCGTCTTTTCCTACTAAGAGCTGCTGCACCGCTGTCCTCCAGTATCCCACAATCCACCATGACCAAGCTGGCAGAGTGGCTGCTGGGGCTGTCCACGCTGGGGGTCCTGTGGGGGGTGGTGACCTTCGACCTGCTGGGCCTGGAGCTGCCGGGGTCCTACCGAGAGGTGGCCTGGCCGCTGCCCGTGTACCTGCTGGTCTGCTTCGGCTGCTACTCTCTGGCCACGGTGGGCTACAGGGTGGCCACGTTTAACGACTGCGAGGCGGCTGCCCAGGAGCTGCAGGAGCAGATCCAGGAGGCCCGGAGAGACCTGAAGAGCAGGGGCCTGAGGCTCTGACCGACACAGACTGGAGCTGGGgcccattttcttttctttattctttaaacCGGCACTGCTCTGGACAACTCTGATTGCCAGTACAGAGGCAGAGAAGAACCCAGGGCTCAGAGACGGACAGACAATTCGTGAGGTTGGGGGGAGAtctgagacttttttttttataggggGCGGGGGTCTGTTAATTGTGTAATTAGGCTGCTGTAATTAATTAGTCCCTTAATTGGAAACATTCCATGTGACTGGGAAAGTGAGTTTGCTAATAAAGAGGTCTCCTACTGATGTGCCTGTCGTTTAGTCCTTCGTGTGCCCCCCTgatcctggaggagcccctaacCTGCTGGCTTGTGTTctaactgagctcttaattacttaattgaaccttaattgatctaatttcctaaatcagagccttgaATTATTGTaagggttttaagttaagtatagaattgtataagtaactttttaaattgtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171498 lncRNA downstream 28269 17350820 ~ 17351911 (-) True G136469
TU171500 lncRNA downstream 61701 17314908 ~ 17318479 (-) True G136470
TU171477 lncRNA downstream 70130 17302926 ~ 17310050 (-) True G136450
TU171463 lncRNA downstream 89784 17290140 ~ 17290396 (-) True G136437
TU171461 lncRNA downstream 90097 17289099 ~ 17290083 (-) True G136435
TU171574 lncRNA upstream 20384 17401979 ~ 17402366 (-) True G136517
TU171575 lncRNA upstream 20842 17402437 ~ 17402721 (-) True G136518
TU171591 lncRNA upstream 34332 17415927 ~ 17416475 (-) True G136521
TU171601 lncRNA upstream 65935 17447530 ~ 17448098 (-) True G136525
TU171614 lncRNA upstream 86294 17467889 ~ 17469776 (-) True G136536
AMCG00012390 mRNA downstream 15731 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 112869 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 125666 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 162541 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012373 mRNA downstream 297973 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012393 mRNA upstream 35904 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012394 mRNA upstream 78328 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 93779 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 126329 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 138060 17519655 ~ 17523079 (-) True AMCG00012398
TU171426 other downstream 137353 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 165217 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 169130 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 176947 17201774 ~ 17203233 (-) True G136412
TU171387 other downstream 246273 17093499 ~ 17133907 (-) True G136378
TU171593 other upstream 34979 17416574 ~ 17434113 (-) True AMCG00012393
TU171623 other upstream 122023 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 304737 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 339131 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 378384 17759979 ~ 17761454 (-) False AMCG00012416

Expression Profile