RNA id: TU171588


Basic Information

Item Value
RNA id TU171588
length 2049
lncRNA type sense_over
GC content 0.49
exon number 6
gene id AMCG00012392
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17474648 ~ 17483359 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTGACCTTCTCATACACCCCTCCTGTTCTATTGTCTCTTAGTccgagagagtgagtgtgtgacagtgagtttgagtttgagtgtgtgtgtgtgtgtgtgtgtgagagagagagagagttaggaCAGAGTCAGTGGGATTTTACATGACTGTACTGTACaagtcaatcagtcaatcaatccaTCAACGAATCAATGATTGTGATTGGCAGAGATCAGGAGGCGTGGCTCTAAGGACCTCCTGGGGAAGATGACCCTGCTGCTGGAGCCAGGGGAGGGCGGGGGcgCGGCCCGAGACAGACGAGAGACCCCCCGCTGAGTATGAGCAGCCGTGGGAGTGGAAGAAGGAGCAGATTGTGAGGGCGCTGTCAGTGCAGTTCGAGAGCTCCGAGCGCCCCCCGGCTGCCAAGGACGACCCCCCCCAGAGCCGCCAGCATCTCCGACAGAAGAGCTGGAGCCAGAGGGTCCTGAAGGCCTCCCCCACTGCTGGAGAGGTGTCAGAGGTCACTTGGGTCGATCCCACACTGCCCCTGGAGAAGCAGAGCTGGTTCCACGGCGCCGTGTCCCGGCAGGAGGCGGAGTCTCAGCTGCAGCCCTGCAAGGAGGCCAGCTTCCTGGTGCGGACCAGCGAATCAGGACACAGCAAATACTCCATCGCCCTCAAGACCAGCCAGGGCTGCGTGCACATCATCGTGGCCGAGACGAGGGACAGCGGCTTCACCCTGGACCAGAGCAGCTGCGTCTTCGGCAGCGTTCCCGAACTCGTGCGCTACTACAGCGGCGAGAAACTGCCCTTCAAGGGGGCGGAGCACATGACCCTGATGAACCCTGTGCCCCGCCCACACTGACATGCCCcacccacaacacacactgactgtctgactgacacactgactgactgactgacaaactgactgactgaatgactgactgactgactgactgactgactgactgacacactgactgactgactgactgactcactgactgactgactgactgactgactgacacactgactgactgactgactgagtgactgacacactgactgactgagtgactgacaaactgactgactgaatgactgacaaactgactgactgaatgactgactgtctgactgacacactgactgactgactaacacactgactgactaacacactgactgactgactaactgactgactgacacactgactgactgactgactgagtgactgacacactgactgagtgactgacacactgactgactgagtgactgacacactgactgactgagtgactgacacactgactgacactgactgactgactgactgacacactgactgactgactgactgacacactgactgactgacacactgacattttGGAGAGAAGGGAAGACGGAACACTGGTAAAGAAATCCCACATAATATTTCTTTGTtcccttttaattattattatgtattgtattagcaCAGTATATCGTTGTAATTGTCATGTtgcgttgttttttttttattttgtgtttgtgggggggggtcCATTACTTAAATCCCAGTAAATCTagcagtaataacaataataacaataataataataataacaacaaattatCTTTCTTTTGAAAAGCCATTGTTACTCCAACACCATGTGAATTGACTTCACCGACTCCAAGCATGTAGCGCAGTGGAGGTCTGGCGCCCCCAGCTGGACACGTCACATGCTGCAGAATTGAGGATTGAATTGCGTTGACCAGCAGACTGTATTTAAAGGAGCTGAATGGAATGGCAGAACTGAGTACAATATGTagcctaattattattatagttattattattattaatggagcCAGAGATGTGTAGACTATAGTATACTATATAGTATAGTTTGGTAtggtatagtataggggcccagattGAAATGTGACTCTGTGAGAAATGTGAAACCAGGCCAAAGACCGTCCTGTTCAGACAGCAACAGAACAGAAAGCAGAGGAATGAATAATGGAAAGAATgtagtggaaaaataaattcttTGCTTCTGAAAcgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171614 lncRNA downstream 4872 17467889 ~ 17469776 (-) True G136536
TU171601 lncRNA downstream 26550 17447530 ~ 17448098 (-) True G136525
TU171591 lncRNA downstream 58173 17415927 ~ 17416475 (-) True G136521
TU171575 lncRNA downstream 71927 17402437 ~ 17402721 (-) True G136518
TU171574 lncRNA downstream 72282 17401979 ~ 17402366 (-) True G136517
TU171624 lncRNA upstream 24718 17504183 ~ 17505377 (-) True G136545
TU171678 lncRNA upstream 34115 17513580 ~ 17514289 (-) True G136574
TU171686 lncRNA upstream 67901 17547366 ~ 17547973 (-) True G136581
TU171695 lncRNA upstream 98989 17578454 ~ 17579296 (-) True G136589
TU171709 lncRNA upstream 130027 17609492 ~ 17609910 (-) True G136602
AMCG00012394 mRNA downstream 9312 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012393 mRNA downstream 51416 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012391 mRNA downstream 93714 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 110199 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 207337 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012399 mRNA upstream 28459 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 40190 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012400 mRNA upstream 47410 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012409 mRNA upstream 155392 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012408 mRNA upstream 167707 17647172 ~ 17649026 (-) True AMCG00012408
TU171593 other downstream 40535 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 93053 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 231821 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 259685 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 263598 17208778 ~ 17211050 (-) False AMCG00012385
TU171623 other upstream 24153 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 206867 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 241261 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 280514 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 288595 17768060 ~ 17770966 (-) False AMCG00012414

Expression Profile