RNA id: TU171593


Basic Information

Item Value
RNA id TU171593
length 1710
RNA type TUCP
GC content 0.57
exon number 5
gene id AMCG00012393
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17416574 ~ 17434113 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAATTTTAGTTAGGCCTCAGatccctctttctttttcagagcaAGTCTGCGGAGGGAGGGCTACACAGTGCAGGTGAACGTCAATGACTACCTAGACATCTACTGCCCGCACTACAACAGCTCGGCGGGGGGTTCGTCCGGGGGTCTGCGTGGGGGCGAGCAGTACGTGCTGTACATGGTGAGCTCTGAGGGGTACCGCTCCTGCGACCCCTCGCTGGGCTTCAAGCGCTGGGAGTGCAACCGGCCACACGCCCCCCACGCGCCCATCAAGTTCTCCGAGAAGTTCCAGCGCTACAGCGCCTTCTCCCTGGGCTACGAGTTCCACATCGGCCACGAGTACTACTACATCTCCACGCCGACGCATCACCACGGCCGGAGCTGCCTGAGGATGAAGGTGTACGTGTGCTGTGCCTCCAcgTCAGAGCAGGACGAGAGGTTCCGCCCCACACAGCCAGACTACACCCTGAGACCCAACATCAAAATAGACGACCTCGacgATTTCCGCCCGGAGGTCCCGCAGTTGGAGAACAGCATCTCCGGGAACAGCCCGACCAGAGAGCAACTCTGTGTCACCGTGGCGACgctcttcctcttctccctGTCGGTGTCCTAGCAACGCCCATCAACAccctctccttcccctcccctcccagtcacacacacacacacacacaccgggaTGGACAGAaaagacggacagacagacagatggaagGAACACTGAGCGAGACGCCAAAACACCCACACAACATaagtgcgtgtgcgtgtgtgactgAACTTTAGTTAACGCACGcactcacagagagagagagagagcgcgacACTGGAGGCggtgcacacacacgcacaggccGCGCCACTTACGGAGGAACTTGGCGTCAACGGTCGGACGGTGGATTTACAAAACGGAGGTCGGCGACACCGCTGTGCTCGCTCTGCTCCGGCGCGTTACTCTTCGCCTGCTGTGACTGACGGATTACTCGTACCCGCGTGTCGGCCCGTGCAGCCGCAGCGGCCCCTTCCCCGCCTGGGGGGTCTCTGGTGGTCTCTgcgggagaggagaggggacgGTTGTTTTACGCGATTCGTCGCCGGGCGGGATCTAGGTTTGAAAGAATTCTCAAACGGAAAAAGACAATCAGATGATTGGGAGAGACCAAAATTGGGGAGACGTCAGAACCGAGGAATGGGAGGAACAACCGGCGCAGTTGAAACCAAACGGGCAAATGTCTGGAGACCCGTGCAGATACACAGCTACAACAGTGTCTTGTGGCCattgtgcgtgtgcgtgtacgtgtgcgtgtgtgtgcgagGGGTGGCAGAGTCAGACACAAGAAACAAGGAGAATTGGGAGAAATATCAAATGACTGGATGGACGACAGTACTTTTGTGTCCAATTATCTGCATACTTATTGTGACACGGTccaatccagtccagtcagCAACTttggtaaaaaaagaaaaaagaaccaACTCATTGACGTTATTATATTTGGATGTTGCACGGAGGCTCCCCCTCACGGCTGGGACACAGAACGACAGAGTGGGGGAGTTTTTCCTGTGGGacggaggaggtgggggggtggccCTGTCTCTCGGACCACAGCCGCCGCTCCCCTGGAGATACAAGGACAAAAGAGACAcaaatacagcaacaacaacaggacAAACTGCAAAGCAATCTGGGATTCTTACAAACTGGGGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171591 lncRNA downstream 99 17415927 ~ 17416475 (-) True G136521
TU171575 lncRNA downstream 13853 17402437 ~ 17402721 (-) True G136518
TU171574 lncRNA downstream 14208 17401979 ~ 17402366 (-) True G136517
TU171498 lncRNA downstream 64663 17350820 ~ 17351911 (-) True G136469
TU171500 lncRNA downstream 98095 17314908 ~ 17318479 (-) True G136470
TU171601 lncRNA upstream 13417 17447530 ~ 17448098 (-) True G136525
TU171614 lncRNA upstream 33776 17467889 ~ 17469776 (-) True G136536
TU171588 lncRNA upstream 40535 17474648 ~ 17479465 (-) False AMCG00012392
TU171624 lncRNA upstream 70070 17504183 ~ 17505377 (-) True G136545
TU171678 lncRNA upstream 79467 17513580 ~ 17514289 (-) True G136574
AMCG00012391 mRNA downstream 35640 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 52125 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 149263 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 162060 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012385 mRNA downstream 198935 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012394 mRNA upstream 25810 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012392 mRNA upstream 41261 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 73811 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 85542 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012400 mRNA upstream 92762 17526875 ~ 17527534 (-) True AMCG00012400
TU171572 other downstream 34979 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 173747 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 201611 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 205524 17208778 ~ 17211050 (-) False AMCG00012385
TU171432 other downstream 213341 17201774 ~ 17203233 (-) True G136412
TU171623 other upstream 69505 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 252219 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 286613 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 325866 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 333947 17768060 ~ 17770966 (-) False AMCG00012414

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019710 True 2091 mRNA 0.48 5 NC_007127.7 23087326 ~ 23189883 (+)