RNA id: AMCG00012394


Basic Information

Item Value
RNA id AMCG00012394
length 558
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00012394
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17459923 ~ 17465336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCGGCCGTGGCTCTCCGTCTGGGTCGCCCATTGTTGCTGTCAGGCTGTGACAAAGGCCGTCTCAGCGTCCCTCTCTTTCACAGCCCAAACAATGGCCTATTCTGTCACTGCTCCACCCAGCAGTGGGGATTTCCACATCCAGGTGCATATCAACGACTACCTGGACATCTACTGCCCCCACTACCCGCCCGACGGCCCCCCGCTGCCCCCCACGGGGCCCGAGCTGTTCACGCTGTACCTGGTGAGCGCGGGGGGGTACCGGGGCTGCCGCGACAGCCCCCCCGCCTTCAAGCGCTGGGAGTGCAGCCGGCCCTTCGCCCCCCACGGGCCCGTGCGCTTCTCTGAGAAGATCCAGCTGTTCACCCCCTTCTCGCTGGGGTTCGAGTTCCAGCGCGGCCAGGACTACTACTAcatctgtgagtgtTACACGGCGTGGCGCACGGCACCTCCTCCCGGCTGCAGCTCCAGCCAGGCGGCGATCCAGCACAGCAGCGCGGCTCCCAGGCGGCGGCGGCTGCGGTCCATGTCGCCGGCCGAGTTCGGGCGCACTTAG

Function

GO:

id name namespace
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171601 lncRNA downstream 11825 17447530 ~ 17448098 (-) True G136525
TU171591 lncRNA downstream 43448 17415927 ~ 17416475 (-) True G136521
TU171575 lncRNA downstream 57202 17402437 ~ 17402721 (-) True G136518
TU171574 lncRNA downstream 57557 17401979 ~ 17402366 (-) True G136517
TU171498 lncRNA downstream 108012 17350820 ~ 17351911 (-) True G136469
TU171614 lncRNA upstream 2553 17467889 ~ 17469776 (-) True G136536
TU171588 lncRNA upstream 9312 17474648 ~ 17479465 (-) False AMCG00012392
TU171624 lncRNA upstream 38847 17504183 ~ 17505377 (-) True G136545
TU171678 lncRNA upstream 48244 17513580 ~ 17514289 (-) True G136574
TU171686 lncRNA upstream 82030 17547366 ~ 17547973 (-) True G136581
AMCG00012393 mRNA downstream 36691 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012391 mRNA downstream 78989 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012390 mRNA downstream 95474 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012383 mRNA downstream 192612 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012384 mRNA downstream 205409 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012392 mRNA upstream 10038 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012399 mRNA upstream 42588 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012398 mRNA upstream 54319 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012400 mRNA upstream 61539 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012409 mRNA upstream 169521 17634857 ~ 17635861 (-) True AMCG00012409
TU171593 other downstream 25810 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 78328 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 217096 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 244960 17213844 ~ 17214963 (-) False AMCG00012385
TU171434 other downstream 248873 17208778 ~ 17211050 (-) False AMCG00012385
TU171623 other upstream 38282 17503618 ~ 17503986 (-) True G136544
TU171745 other upstream 220996 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 255390 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 294643 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 302724 17768060 ~ 17770966 (-) False AMCG00012414

Expression Profile