RNA id: AMCG00012398


Basic Information

Item Value
RNA id AMCG00012398
length 2439
RNA type mRNA
GC content 0.68
exon number 3
gene id AMCG00012398
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17519655 ~ 17523079 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAGAGGAGGTGGCCGTGCCAGAGCATCGCGCCAACCTCCCCCCTGTCAGCGTTCGGCCAACTGTCACCAGAGCTACCCCGGTCGCGGCCGGGCGGCCCGCTCTTGGCAGCCACTCCAGCTCCCCTTTCCCCGCCCTCCACCTCCCTTCCCGCCCCCGGGGTCACTGCCCCAGCCCCCCCTACAACACTTTCCAGTCGGACCCCCGTCCCACCCTCCCGTCGCCAACGGCCACAGCTGCCACCCAGACTTCCACCTACAGCAGGTGCAGTTCCTGCGGGGGCAGAACACACAGGCTCCCCAGTTCCAAGGCCCGGCCTGGCCCAGCAGAGTGGCGGAGAGGGACGCAGGCGAGGAGAACGAGAGCGGCAAGAGCGGCGGCAGCAGCGGGGGGGTCGGAACCGGGCCAGGAAAGAGGCCCAGAGCACCCCAGCACCGAGGCGGGTACCACAGCTCGTACTCCGCCCACTCCCACAGTGCCAGCCCTGGCCAGAGGGGGCACTGCAGGGGCTACAGCAGGGGAAGGGGAGACTACACATACAGCCACACTCACGCTCAGAACTGGGCCCAGTACCCTGGCCAGAACCGGTACCACAGAGGCGGGCGGAGAAGCCCGTGTGCCGACCCCGTCGACTGCCTGTCCCAGAGCCTGGGGGACCTGGCCCTCGGCGACCGTCGCAACTCGCCCAATCCACGTAGTGCGGCTGGGGCCCGTCCTTACGCCGACGACCGGCTGGTGCAGGGCTTGGTGCTGGACTGTCTGGCGTCCCTGGACCCGGGTCAGGTGCTAGAGCTCCGAAAGCTGGTCAGAACCCTCAGCTTTCCCAAGGCAGTGGTGAACCGGGCCCTATACTCGCTGCAGCTCCAGGGCCGCACCCAGAAGCACGGGGACGTCCCTCCTCTCTGGAGCCTGCGGAGAGAGGTAGGACCAGAGGAGGAGTGCAGGGGCTTGGGGGGAAagcagggacagagggagagagaggagaaggaggaggcagaggaggaggcagaggaggaggcagaggaggaggaggaggaggaggaggaggaagaagaagaagaagaagaagaagaagaagtgtTCCCAGATTTTGATTTGGACTCTGAcaaggaggaggaaggagaggtgATCGTAGAGGCGACAGAACGAGAGAGAGACGatcgaggaggaggaggaggagaacgaGTGAGACACGGAGGAGAGGCACCTGGGCAGGACTCTGACACGGACGGCTCGCTCCCAGACTTGGAGATagagatggagggggagagggaggacaTCCGGGAGCGCGTGTGCCAGTACCTGCTGACGTCGGGCCGCTGCAATGCCCTGGGCATCGCCAAGAACCTGGGCCTGCGCACGGCCAAGCAGGTGAACCCCACGCTGTACGTCCTGGAGAAGCAGGGTGACGTCTCGCGGGATGCCGCCATCACGCCCCACCTGTGGGAGCTCACTGACCACAAGCGCCAGCGCCTGGAGCGCCAGAGGAAGGCCCAGCTCCCCggccccgcccccgcccccacGGCTGCCGCTGTTGCCTCGGTGATGCTGCCGCCGTCCGCTGCCCATCTGGAAGATGCTGTCCCACTTCCTGCTCTGATGGAGGAGGGTGGCGCCGGGGAAGCCGGACAGGAAATGGGCAACGGGGAACAGCCACAGCAGCCACCACCTCCACACAACGCTGCCaagcaggaggaggaagatgaagaggagaaggaggaggaggtccGATGCAAGAAGCCCAAGTTGGATCCAGAACTGCAGCCCACCTCGTCCCCACTCGGGGAGCTGGGGCAGAACGGGCAGTGGGCCTCGGACGAGATCCCGGAGTTCCTGAACGCCATGGTGGGCGGCGGCACCGGGGGGGCGGTGGCGCAGGAGGGGGCCGGCGGCTCGGCGGCGCTGCGGAAGCTGCTGGAGGTCCGGGCCAAGAACCCGGTGAGCGGGCTGCTGGAGTACGCCCAGCACTGCGGACACACATGCCACTTCCTGCTCCTGCAGCAGAGCGGGCCCTCCCACGACCCCAGGTTCAGGATGCAGGTGGAGCTGGGCGGCCGCAGATTGCCAGTGGCTGAGGCGTCCAGCAAGAAGACGGCAAAGAAGGAGGCGGCGGCTGAGGCGCTGCGGCTGCTGCAGAGGGAGCTGGAGGCCGGGGAGGAGCTGTGGGCGCAGGACCCCGACCCCTCTGCCGACCCCGCGGTGAGAGAGGGGCCAAGGCGGAGTGGGGCTGTCAGAGGGGCGGGGCCGCGTGGTGTGGCCCTGGTGGGCGTGGCCTCGGAAGGCATGGTGCCGGAGGGCGGGGCGGTGGCCGTGTCGCGCTCCCTCCCCGGGGGCAAGAACCCGGTCAGCCTGCTGATGGAATTCAGCCAGAAGAGCGCCAGCGCCTGCGAGTTCCTGCCCCTGGCCCAGCAGGGCCCGGCCCACGACCCCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171678 lncRNA downstream 5366 17513580 ~ 17514289 (-) True G136574
TU171624 lncRNA downstream 14278 17504183 ~ 17505377 (-) True G136545
TU171588 lncRNA downstream 40190 17474648 ~ 17479465 (-) False AMCG00012392
TU171614 lncRNA downstream 49879 17467889 ~ 17469776 (-) True G136536
TU171601 lncRNA downstream 71557 17447530 ~ 17448098 (-) True G136525
TU171686 lncRNA upstream 24287 17547366 ~ 17547973 (-) True G136581
TU171695 lncRNA upstream 55375 17578454 ~ 17579296 (-) True G136589
TU171709 lncRNA upstream 86413 17609492 ~ 17609910 (-) True G136602
TU171682 lncRNA upstream 97060 17620139 ~ 17621187 (-) True G136578
TU171713 lncRNA upstream 105808 17628887 ~ 17630828 (-) True G136605
AMCG00012399 mRNA downstream 8563 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012392 mRNA downstream 36296 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012394 mRNA downstream 54319 17459923 ~ 17465336 (-) True AMCG00012394
AMCG00012393 mRNA downstream 96423 17417499 ~ 17423232 (-) False AMCG00012393
AMCG00012391 mRNA downstream 138721 17380656 ~ 17380934 (-) False AMCG00012391
AMCG00012400 mRNA upstream 3796 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012409 mRNA upstream 111778 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012408 mRNA upstream 124093 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012415 mRNA upstream 168662 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 234255 17757334 ~ 17764561 (-) True AMCG00012416
TU171623 other downstream 15669 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 85542 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 138060 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 276828 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 304692 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 163253 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 197647 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 236900 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 244981 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 575101 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile