RNA id: AMCG00012401


Basic Information

Item Value
RNA id AMCG00012401
length 3234
RNA type mRNA
GC content 0.67
exon number 10
gene id AMCG00012401
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17509372 ~ 17522821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACTGACCCAGGGTGACGGAGTGCAGGTAGACGGGCTGCAGGAAGTGGCTGAGCAGCGCCCCCTGCAGGCCCAGCACGTTCCAGCGCAGGATCTTCTCATTGTTCGCAGCCGCTCGCCGTGCTGGATGCCGTCCCAGGTGGGCACGATGTCGCTGGACTCCACCGGGATGGTGCCCTCAcctgggggggcggggggaatGGGAGAAGAAGAGATTGATGCCATCAGAGAAACCCTGATCAcgtggaggaggaagagaggcgACCAGAGGACAGGGGGCAGCGGGAGGGACTCACCGTTCTCCACCTTGGTCCTCAGCTTGCCCTGCTTGGCGTTCTCAAACAGAGGCTGGTGCCCCGGCCCCGCCCCTGCCGCCGGCTCACTGCACGACTTGTCGAACAGAGCGCCGTCGCCACAGGGGGCcgtactgagagagagagggGCTGACCACCGTGCCCAGGCTGTCCCCTCTCCTCATGACGAAGGTGGCCAGGATCTTGCGTCCCAGCAGGCTGTGCTGTATGCGGGCGGTCAGCGCATTGAAGCGCTGGTGAAGGTGGGTGACCGGCTCTTCCCGCCTGTCGTGGCGCACAGTAAGAAGCTGGCCAGGCAGATGGCAGCGGAGGCAGCTGTGCAGGAGCTGCTGGGAGAAGGACAGCACTCCCTCACGCCCAAGGCACTGACGCCCCCTCACGCCCAAGGCACTGACGCCCTGACGCTCCCTCAAGCCCAAGGCACTAACGCTCTGACACTCCCTAACCCCCGATGCATGCCTATCCAGTACAAGACCTATCCGATTGCAATTGAACCAGCGACGCTAacgctgccccccccccccccacagccgcCGGCACTGAGTTTTGAGCCCCAGGACGCCCCCCCTGCCCTGCCAGCTGCGCCGTTGCTGCCCCCCCTGACGGTGGCGGAGCTGGAGGCAGCCCACGCGGCCGGGGTGGGTGACCTCATCAACCACCTGAACAAGAACGCCATCAGCGGTCTGCTGGAGTATGCGCGCTCCAAGGGCTTCGGCGCCGAGATCAAGCTGGTGGAGCAGGCCGGACCCCCCCATCAACcccgGTTCACGTACCAGGCAAAGCTGGGGGGGCGCTGGTTCCCCGCGGTGTGTGCCAGCAGTAAGAAGCAGGGCAAGCAGGAGGCAGCCGACGCGGCGCTGCGGGTGCTGATcggggaggcagagagagccGCCCGCACCACCCCCCTTGCCCCTGAGGCGCTGGCGCTCTTCTGGCTGAATTCCATCAGCAGGCTGACCGGGTTCTTGCCCCCGGGGAGGGAGCGCGACACGGCCACCGCCCCGCCCTCCGGCACCATGCCTTCCGAGGCCACGCCCACCAGGGCCACACCCTGCACAACAATGACACACGGTCACACACGCGGCCCCGCCCCTCTGACAGCCCCACTCCGCCTTGGCCCCTCTCTCACCGCGGGGTCGGCAGAGGGGTCGGGGTCCTGCGCCCACAGCTCCTCCCCGGCCTCCAGCTCCCTCTGCAGCAGCCGCAGCGCCTCAGCCGCCGCCTCCTTCTTTGCCGTCTTCTTGCTGGACGCCTCAGCCACTGGCAATCTGCGGCCGCCCAGCTCCACCTGCATCCTGAACCTGGGGGGGGACGGGGGTCAGAGCAGTGCAAGAGTATGCTGGGCGTACTCCAGCAGCCCGCTCACCGGGTTCTTGGCCCGGACCTCCAGCAGCTTCCGCAGCGCCGCCGAGCCGCCGGCCCCCTCCTGCGCCACCGCCCCCCCGGTGCCGCCGCCCACCATGGCGTTCAGGAACTCCGGGATCTCGTCCGAGGCCCACTGCCCGTTCTGCCCCAGCTCCCCGAGTGGGGACGAGGTGGGCTGCAGTTCTGGATCCAACTTGGGCTTCTTGCATCggacctcctcctccttctcctcttcatcttcctcctcctgcttGGCAGCGTTGTGTGGAGGTGGTGGCTGCTGTGGCTGTTCCCCGTTGCCCATTTCCTGTCCGGCTTCCCCGGCGCCACCCTCCTCCATCAGAGCAGGAAGTGGGACAGCATCTTCCAGATGGGCAGCGGACGGCGGCAGCATCACCGAGGCAACAGCGGCAGCCgtgggggcgggggcggggccGGGGAGCTGGGCCTTCCTCTGGCGCTCCAGGCGCTGGCGCTTGTGGTCAGTGAGCTCCCACAGGTGGGGCGTGATGGCGGCATCCCGCGAGACGTCACCCTGCTTCTCCAGGACGTACAGCGTGGGGTTCACCTGCTTGGCCGTGCGCAGGCCCAGGTTCTTGGCGATGCCCAGGGCATTGCAGCGGCCCGACGTCAGCAGGTACTGGCACACGCGCTCCCGGAtgtcctccctctccccctccatctctATCTCCAAGTCTGGGAGCGAGCCGTCCGTGTCAGAGTCCTGCCCAGAGTCCAAATCAAAATCTGGGAacacttcttcttcttcttcttcttcttcttcttcctcctcctcctcctcctcctcctcctctgcctcctcctctgcctcctcctctgcctcctccttctcctctctctccctctgtccctgctTTCCCCCCAAGCCCCTGCACTCCTCCTCTGGTCCTACCTCTCTCCGCAGGCTCCAGAGAGGAGGGACGTCCCCGTGCTTCTGGGTGCGGCCCTGGAGCTGCAGCGAGTATAGGGCCCGGTTCACCACTGCCTTGGGAAAGCTGAGGCACCTGACCCGGGTCCAGGGACGCCAGACAGTCCAGCACCAAGCCCTGCACCAGCCGGTCGTCGGCGTAAGGACGGGCCCCAGCCGCACTACGTGGATTGGGCGAGTTGCGACGGTCGCCGAGGGCCAGGTCCCCCAGGCTCTGGGACAGGCAGTCGACGGGGTCGGCACACGGGCTTCTCCGCCCGCCTCTGTGGTACCGGTTCTGGCCAGGGTACTGGGCCCAGTTCTGAGCGTGAGTGTGGCTGTATGTGTAGTCTCCCCTTCCCCTGCTGTAGCCCCTGCAGTGCCCCCTCTGGCCAGGGCTGGCACTGTGGGAGTGGGCGGAGTACGAGCTGTGGTACCCGCCTCGGTGCTGGGGTGCTCTGGGCCTCTTTCCTGGCCCGGTTCCGACCCCCCCGCTGCTGCCGCCGCTCTTGCCGCTCTCGTTCTCCTCGCCTGCGTCCCTCTCCGCCACTCTGCTGGGCCAGGCCGGGCCTTGGAACTGGGGAGCCTGTGTGTTCTGCCCCCGCAGGAACTGCACCTGCTGTAG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0003726 double-stranded RNA adenosine deaminase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171618 lncRNA upstream 19828 17489319 ~ 17489544 (+) True G136539
TU171617 lncRNA upstream 20545 17488350 ~ 17488827 (+) True G136538
TU171538 lncRNA upstream 33275 17434229 ~ 17476097 (+) False G136489
TU171659 lncRNA downstream 100292 17623113 ~ 17635961 (+) True G136564
TU171663 lncRNA downstream 125807 17648628 ~ 17649107 (+) True G136568
TU171665 lncRNA downstream 126444 17649265 ~ 17653462 (+) False G136569
TU171670 lncRNA downstream 140612 17663433 ~ 17664170 (+) True G136571
TU171869 lncRNA downstream 378087 17900908 ~ 17901656 (+) True G136718
AMCG00012395 mRNA upstream 4800 17497454 ~ 17504572 (+) True AMCG00012395
AMCG00012387 mRNA upstream 120700 17385560 ~ 17388672 (+) False AMCG00012387
AMCG00012386 mRNA upstream 129251 17374960 ~ 17380121 (+) True AMCG00012386
AMCG00012388 mRNA upstream 137819 17369263 ~ 17371553 (+) True AMCG00012388
AMCG00012389 mRNA upstream 219477 17269066 ~ 17289895 (+) True AMCG00012389
AMCG00012396 mRNA downstream 6952 17529773 ~ 17537629 (+) True AMCG00012396
AMCG00012397 mRNA downstream 29765 17552586 ~ 17578771 (+) True AMCG00012397
AMCG00012406 mRNA downstream 58555 17581376 ~ 17598072 (+) True AMCG00012406
AMCG00012404 mRNA downstream 82912 17605733 ~ 17609903 (+) True AMCG00012404
AMCG00012407 mRNA downstream 91673 17614494 ~ 17621187 (+) True AMCG00012407
TU171527 other upstream 33275 17474648 ~ 17476097 (+) False G136489
TU171552 other upstream 43313 17459484 ~ 17466059 (+) True G136499
TU171338 other upstream 244968 17231376 ~ 17264404 (+) False G136341
TU171333 other upstream 274423 17231376 ~ 17234949 (+) False G136341
TU171331 other upstream 374542 17129980 ~ 17134830 (+) True G136341
TU171641 other downstream 24547 17547368 ~ 17547968 (+) True G136558
TU171661 other downstream 122820 17645641 ~ 17646905 (+) True G136566
TU171664 other downstream 127946 17650767 ~ 17653462 (+) True G136569
TU171766 other downstream 232599 17755420 ~ 17757687 (+) False AMCG00012417
TU171770 other downstream 241324 17764145 ~ 17767531 (+) True G136641

Expression Profile