RNA id: AMCG00012408


Basic Information

Item Value
RNA id AMCG00012408
length 1278
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00012408
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17647172 ~ 17649026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCGGACAGACTGCGCTCTGTGCGAAAACAGATCCAGACGGAATTACCGAGAACCCCTCAGACTCCTGGAAAACGACACTCACTCACCGACCGCCCGGTTTCCCAATGGTTGTGCAGGTGAAACCCGGCGTCCATCCGAGCACCAAGACGATGGAGGGAAACCAGCACAAAGTGGAGGCTAATATTTTACTCCTGGGAGCCGAAAATGTGGGCAAGTCTGcgcTCACGGTGCGCTTCATGACCCGCAGATTCATCGGCGAGTACGGGGATATAGaATCCATATACAGCCACAGCGACAAGATCGACGGCAAGGACATCTGCTTCAACATCTGGGACTCTCTGTACCAGGAGaACTGTGCCGACGCCGGCATCATCAGCCAGGAGCAGCTGCGCTGGGCGGACGGCTTCATCCTGGTCTACAGCATCTGCGACCGCCAGAGCTTCCAGGTGGTGCGGCAGCAGGTGCAGAGGATCCGCCAGGCCGGCAGTCGGAGGTGCCGGGGCGGGGCGGGCGGCGGGCCAGTCGCCATGCCGCCCATCGTCATCGTGGGCAACAAGAGGGACCTGCAGCACCGGCGGGAGGTGTCGGCGGAGGAGGGCCGGCTGCTGGCGCTGGCCGCCGGGCCGGACTGCGGCTTCTTCGAGGTGTCCGCCGCCGAGGCGCACCACGGCGCCCTGCTGGTGTTCCACGGCCTGCTGGAGCGCATCAGGGAGGCCCGCGGTGCCAGGAAGGGGAGCGGGGCCGGATCGGGCACCGGGCTGCGCGGCATCGTCCGGAGCGTGTCGGCCGTGTTCGGCAGGAGGAGGacggagtgagggagaggggggaagcGGACTGCACTGATCCACAACGGAGGTGGAGAGGGGGTTGGGATGGAGGGGAGTTGGACACACTGATCAAGATGGAAGAGATGCAGGGAGGAGAGACGGACATGGCTCGTTGGTGCTCGTTGGGGGATCAGCTGAGGGCTTTCTGTACGTTGCAAAGAAAGGACGGAGAGGGAAGCGAAGCTCTTATCACTGCAGTGCAGTGGGCAGttattggtttttttttttccatggtgGAAATCTATTTAAGAGACTTCAGGGCttagaccctgctggactggactgggcttGACTAGAAGATGGGGCTTGGGAGGGGAGCCTGGGGAGACCCCTGCTGCCCATGTGACCACATCTCTCCTGTCTGTTGCCTTAATGATGTCATAATGATGCTGGTTTCTGGGTGAAGCAGTCACTGGTGTGGGctgtgctggggggggggggtcgggTG

Function

GO:      GO:0044763

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171717 lncRNA downstream 3414 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 16344 17628887 ~ 17630828 (-) True G136605
TU171682 lncRNA downstream 25985 17620139 ~ 17621187 (-) True G136578
TU171709 lncRNA downstream 37262 17609492 ~ 17609910 (-) True G136602
TU171695 lncRNA downstream 67876 17578454 ~ 17579296 (-) True G136589
TU171729 lncRNA upstream 14429 17663455 ~ 17664170 (-) True G136616
TU171737 lncRNA upstream 33181 17682207 ~ 17684183 (-) True G136623
TU171805 lncRNA upstream 71700 17720726 ~ 17723415 (-) False G136666
TU171905 lncRNA upstream 263212 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 292446 17941472 ~ 17963244 (-) True G136750
AMCG00012409 mRNA downstream 11311 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012400 mRNA downstream 119638 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 124093 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 136080 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012392 mRNA downstream 163813 17475374 ~ 17483359 (-) True AMCG00012392
AMCG00012415 mRNA upstream 42715 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012416 mRNA upstream 108308 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 118384 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012419 mRNA upstream 133461 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012421 mRNA upstream 179981 17829007 ~ 17842851 (-) True AMCG00012421
TU171623 other downstream 143186 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 213059 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 265577 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 404345 17233928 ~ 17242827 (-) True G136408
TU171433 other downstream 432209 17213844 ~ 17214963 (-) False AMCG00012385
TU171745 other upstream 37306 17686332 ~ 17688512 (-) True G136625
TU171807 other upstream 71700 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 110953 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 119034 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 449154 18098180 ~ 18100627 (-) True AMCG00012437

Expression Profile