RNA id: AMCG00012414


Basic Information

Item Value
RNA id AMCG00012414
length 4644
RNA type mRNA
GC content 0.69
exon number 10
gene id AMCG00012414
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17767410 ~ 17779122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGATATGAAGACCCCAGATTTCGACGACCTCTTGGCAGCCTTCGACATCCCTGATATGGAGGCCATCGGGTCGGCGCCCGAGGAGGCCGAGGGCCACCACGCCAACCACGGCGGCATGGTGAAGCAGGGCGGAGGTGGCGGCGGGGGAGGGGCTGGAGGAGGCGGGGGGGGAGGTGGTCCCTCGAGCCCCCCCAGcgaccaccaccaccacccccaccatcaccaccagcaccaccaccaccaccagaaCGTGCCGCTCGCCCCCGCCCTGCCCTCCGACCCCTCGGTGGTGAGCGTGATCGTGAAGAACAGGGTGCGCCCGGAGAGCTTTGGCGATGTGGAGCAGGACCCCGAGCggcaggacagagagagggaccgAGGCGGGGCGGAGACGGGAGGTGGAGCGGGGCAGGGCCTGAGCGGCCGGGGGTCCTCGGAGTCGGCGGTGAGCCAGAACGGGTTTGCGGTGGGGGCAAACCCCTCGGACCCCTCCCTCCGGCCCCTCGGCCCAGCCCAGGTCTCTAATGGGGAGCTGTGGCCGCCCTCCCCACCCAGGACCGGCGGGGCATCCGAGAGCTCAGCGGCCGGGGGCGGCAGCAAACACAACGTCAACATCTTCAACAAACTGAAGCCGCTGATGGCCCAGGGCCCGGCCGACACGGTGGGCAAGGCTCGGAAGATGCTGCTCATGCAACAGCAGaagcagctccagcagcagctccagctgCACCAGAGTGGCCCCCCAGGCGTGGAAGAGCCGGCACAAGGGGAGACGTCCGCTCTGTCTTTCGCCTCCGCTGCCTCTGCCCTCGTCCCCGGGGTCACCGTGGCTATGTCCTCTCCTTTATTTCCTCCTCCCAAGCCGCCGAACCCCCTcccttccttctcctcctcctcttcctcctcccctctctctgccgTTAATCTGCTGAACCCGGGgaccccctccctctcttcctcctcttccgcCCACCCTCCCTTCAACGGGAAGGGCAGGGCATCCCCGTTCCAGCCCCTGGACTCCGAGGACTCCGACTCGGACCCGGATCTGGTCATCCAGGAGGGCCCCGATTCCCCGGCCCTCCCCCCTGGCCCTCTCTCCCCATCgctgccccctccctcctcctctcccccccctcttcctcctcctcctccgccgccgccgccaccaTCCCGGGCTCGCTCTCCCCTGGCCCCCCGGCCCCACTCCCCCAAATCCAGAGATGGCCTCCCTTCCCCTGCCCTCCCACCAGCGACCTCCTCCTCCCACTCCGGTGAGCCGCTGGACCCACGGGATAAGAACCCGGAGCATGTCATCGAGGAGAGGGATTCCCCGGAGAGCCCCGATTCCGAGCTCCCCAATCCACCAACACTGGCTGCTTGTGTTGGCAGCTCCTTGAACTCCAACACCACTACTAACTCCGCCGCTACTACAACCTCCGCTGCGGCTACTACAGACTCCCCCGCTCCTCCCGCTCTGACCACGAACTCTGTCTCCATCACTCCCGCCActgggagggaggagggagagatgagagaggaggaggaggaagaggaagaagaagaagaggaggaggaggaggaggaggaggaggaggaagaagaggaggaggagggggaggtggaggaggaatcTGAGGAGGGAGAAGAAGGGATGGGTGACggggaggtggtgggggaggtGAAGAGGAGTGGCCAGGAGATGGagagcgaggaggaggaggaaatgGAGGAGGAAGCGATGGAGGTGGAGGATGGGGAGGCGGAgcgaggcggaggaggaggcaAAGGGGTGGCGGTGGCCAGCAGCGGTCAAAGTCCCTCTTCCAAACCCCCTTCCCTCccacctccctcctcctcctcttcttcctctgctCCCTCCACGTCCCTCTCTTCTCGGCCCCTGAAGGTCCGGATCAAAACCATCAAGACGCCCACGGGCAGCATCACTCGCACCGTCACCCGGGTGGCGGGCAAGGGCGGGGCAGGGGCCGCCAAGGGGGCATCGGCGTCCTCGGCCACGAAGGGCTCTGGGAAGAAGACGGCCGCGCCACAGAGCGGGAAGAGCCGCCGGGCGCCCGTGGGAAAACCGCACCCCgccgctcctcctcctccgcagCAGGCGGCGGCAGCAGCCCTGACCCCACGCCCTCGGGCCAAAGCCGCCATCTTGCCCGTGTCCACACTGCAGGATGCCAGCTCCGCCATGCTGGTCGCCGCCAGCAAGGCCCAGAACAAGATGGCACAATCTCCCGCCTCCACGGAGAAGAACAGATCCGCCCTCTCTTCCGCCCTCTCCTCCTCCGCTTCCAcctccaccacctcctcctcctcctcgtcctcctcctcctcctctcccgtGGTGGCCAAGTTCGGTGTCAGCGGCGGGATCAGCGTGCGCTCGGTGGCGCCGAAGCAAGTGACCGGCGGCACCCAGGGCTCCAAGCCGGCCTCGATCGTGAACAGCAGCGGTGCAGTCATCTCCCGCAGCCAGTCCAGCCTGGTGGAAGCCTTCAACAAGATCCTGAACAGCAAGAACCTGCTGCCCAGCTACCGGCCCGACCTCTCGGTGCCGCCGCCCCCGGAGTGGAGCCTGCCGCTGCCCGCCAACGGCTACCGCTGCCTGGAGTGCGGCGACTGCTTTGCCCTGGAGCGCTCACTGGCCCGGCACTACGACCGGCGCTCGCTGCGCATCGAGGTCACCTGCAACCACTGCGCCAAGCGGCTGGCCTTCTTCAACAAGTGCAGCCTGCTGCTGCATGCGCGGGAGCACAAGGAGCGCGGCCTGGTCATGCAGTGCTCGCACCTGGTCATGCGGCCCGTGCATGCTCTCCCCTTCATGGGGGTGGCAGTGGCCGCCGGGGGCTCGGCGGTCCCCTCCACCCCCGTGGCCCCAAGCCCAGCCAAGGGGGGACACCCGGCACCCCAGTCCAGCCCAGCACGCAAACCCAGCGAGGGACCCCAGGCCGTGCTGCCCCTGCCCTGCAAGAAGGGCGAGGTGCTGCAGTACCACAACTTCAAGTGCCCGGAGTGCAGGGTGCAGTTCGGGGGCAAGGCGCAGCTGGTCGCCCACTTCCAGGAGGTCAAGGCCACCTCGAACGCGAGCTGTATGCTATGCTCTCCCGCCATGATGCTGCCCAACCCGTGCAGTGCGGCGGCTCACCAGCGCGTCCACAAGCACCGCTCGCCCCATGTGTGCCCAGAGTGTGGCGGCATCGCCCGGCCTGCCAGCTTCCAGACCCACCTGGAGGAGGCCTGCCTGCACTTCGCCCGCCGCATCGGATACAAGTGCTCGAGCTGCCAGGTGGTGTTTGGGGGCCTTAGCTCCATCAAGTCGCACATCCAGACAGCCCACTGCGAGGTCTTCCACAAGTGCCCCAGCTGCCCCATGGCCTTCAAGATGATTTATAAGTGTGTGATGTGCGACACGGTCTTCACCCAGAAGCCTTTGCTCTACATGCACTTCGACACCCACCTGGCCAAGCAGAAGacGGCTCACCGTGGCATATCTGTGAAGCCAGAGCCCCCCCCGCCAGCGCCAGCCCGCGCCCCcccgccctcctcctcctcctcctccagcgcTGCCTCCGCCCCCAAAGCCAGCCGCCTCTCGGCCACCAAGAGTGAGCCGCGGCACAGCAGCTCCGACGGGGAGGAGGACAAGGAGCAGGAGCggggaagggaggaggaggaggacggggacggggagggtgaggaagaggaggacgaggacgagcCCCCCAGCTCCCCCGAGGCCCGGGCCAGCCGCCCCGCCCCGCGTCGCACCGCCCCCTCGGAGTGGAGCTGCCGGCAGTGCGTGCTGCGCTTCAGCGAGAAGGACGAAATGCCTCAGCTGCAATCGGTGAAGAAGTTCCCGTGCCCGCTGTGCGAGCGCTCCTTCTGCTCCGCCCCCAGCCTGCGGCGCCACCGGGGGGCCCCCGTCTCCACTGCCGGCCGCAATGCTGACAGCTCCTCGGACACGGAGGGGGGGCCCGGCTCAGGCGgcggcgaggaggaggaggagggtgaggagggaggaagaggcCGAGAGGCGGAGGAGAGGGCGGAGGGCCGTGACCGGGCCGCGGGCGGCAGCCCTGTGAAGCGAGCGCGGGGGGCGGGAGCGTCCTCGCCCTCGGCCTCGCCCCCGGACCCCGGCGCGTTCCGCTGTGCCTCCTGCGGCTTCTCCACGGAGGACCAGGACGCCTTCCTGCGGCACATCCCGCAGCACCGGCCCGACGCCTCCTCACGCCAGTGCCCCCAGTGCGGCGCCTGCTTCACCTCACTGGGCTCGCTCAACCGGCACCGCTTCATCACGCATCGCGTCCGCGCCCCCGAGGCCCCGCCCACCGGCACGGCACCGCCACCCCCTGCCAGCTCCTCCACCACCGCGGCCGGCGCCTCTTCCCCCCCGGACCCCTCCGCCCCGCCACCAGTCTTCTtcagctcctcctcctcgcccGGCTCCCCCACCTCGTCCTCGCCGCCCCCCGGCTGCACGGAGGAGGGTGAGGACCGGCTGGCGTGCCGCGTGTGCCGCCGGCGCTTCGAGCGGGCGGCCGACCTCAGTACGCACTTCCGCACCCACGGCATGGCCTTCATCGCTGCCCGCAAGACCGGCGGCCCCGATAAGCCGTGA

Function

GO: NA

KEGG:

id description
K24375 ZNF687; zinc finger protein 687

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171805 lncRNA downstream 43995 17720726 ~ 17723415 (-) False G136666
TU171737 lncRNA downstream 83227 17682207 ~ 17684183 (-) True G136623
TU171729 lncRNA downstream 103240 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 123652 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 136582 17628887 ~ 17630828 (-) True G136605
TU171905 lncRNA upstream 133116 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 162350 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 333554 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 361629 18140751 ~ 18179687 (-) True G136826
TU172125 lncRNA upstream 640887 18420009 ~ 18493905 (-) True G136915
AMCG00012416 mRNA downstream 2849 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012415 mRNA downstream 70125 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012408 mRNA downstream 118384 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012409 mRNA downstream 131549 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012400 mRNA downstream 239876 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012419 mRNA upstream 3365 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012421 mRNA upstream 49885 17829007 ~ 17842851 (-) True AMCG00012421
AMCG00012422 mRNA upstream 64086 17843208 ~ 17852603 (-) True AMCG00012422
AMCG00012420 mRNA upstream 76198 17855320 ~ 17860790 (-) True AMCG00012420
AMCG00012425 mRNA upstream 122434 17901556 ~ 17909492 (-) True AMCG00012425
TU171825 other downstream 5956 17759979 ~ 17761454 (-) False AMCG00012416
TU171807 other downstream 43342 17720726 ~ 17724068 (-) True G136666
TU171745 other downstream 78898 17686332 ~ 17688512 (-) True G136625
TU171623 other downstream 263424 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 333297 17416574 ~ 17434113 (-) True AMCG00012393
TU171956 other upstream 319058 18098180 ~ 18100627 (-) True AMCG00012437
TU172031 other upstream 426253 18205375 ~ 18237256 (-) True G136837
TU172106 other upstream 596208 18375330 ~ 18378297 (-) True G136900
TU172290 other upstream 1253481 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 1662805 19441927 ~ 19507394 (-) True G137199

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019693 True 3824 mRNA 0.49 11 NC_007127.7 21918503 ~ 21938044 (+)