RNA id: AMCG00012415


Basic Information

Item Value
RNA id AMCG00012415
length 1407
RNA type mRNA
GC content 0.65
exon number 9
gene id AMCG00012415
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17691741 ~ 17697285 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTTCGACTACCAATCGATTAAAGAGGAGGAAGCGCAGCACAGAGAGGAGATACTGCGCTCTCTGCCAATCCCACACGAGAGACGACTGCCACGCCCACAGTACTCGGAGTCCCCGCCTCCACGCAAGGCTCCTCCAATCAGACCCCGGGGCAGCCTCAGGGTCCGCCCACTACAGGAGGGGGTGGCGCCGCCCAGGAGCCAGCCGGCCAATAGCAGGAGTGAGAGAGAGGCCGGTGCCCCAGTGATGGCCCCCCTGTGCCTGGAGCCGCTGCCCCCCTCCCTTCGCGCTCACACCCTGCTGTGGTTCGAGAGGACACAGCTGCCCCGCCTCCGCCAGCCTGATGGCTCTCTGCCCGACTGGCTGCACGGCTTCGCCACACGCAGGGAGGCCGAGGAGCTTCTGAAGGACGAGATGCTCGGTTGCTTCTTGCTGCGACTCAGCGAGTCAAAGATTGGGTTCGTCCTGTCGTACAgGGGACAGGACCGGTGCCGTCACTTCATCGTGGAAGAGCTGAAGGGGGGCAAGTACGTGATCGCGGGGGAGGACAGTCACCATGGCAGCCTGCAGGAGCTGCTATCCCACTACAGCACTCACCCCagacagacagggggCGGCAGGCTAGAGAGGAGGCAGGCCCCCGCGGACTCCACCACAGCCCAAACCGCCCAGCCCCTGAACAGCGACACGGCACAGTACGCAGTGGTCAAAAAGCCTCTGAGGAAGTCAAAgtcactcatacacacacatgATGCCCCCTACGCTCGAGTCAACAAACCCCCCAGAGCCACCGCCGCTGCCGCCACCGCtgcctccaccaccaccaccaccaccaccaccacctcctcctctccccccacCGCcgcctccttccctctctcacGCAGGGGCTCAGGGGGGGAGCAGAAGTACTGGGAGCTGGTGCCCATGCACACGTACGAGGAGACGGGCCATCTGGCCACACCACCCCACCAGGGCCCAGTGGAGGAAGACATCGCTTTCTATGCCATGGGCAGGAGCGGCGGCATGGCAGGTGGCGGCATGGCAGCCAGTCCGCAGAACCACCTGTACTCGGAGGTGAACCTGCGCAGGGGCCGGGAAGGGGCTGCTCAGGCCTTCCCCCCGCCACCCTCAGCCCCAGTTTGCATCCCCAACACGGGCCGCCATGCCCCAGAGCTCCCCCAGCGCCCCCCACCCAGGAGTGTGGGGAGCCCCTTGCGTCAGGACTGCTTGACACAGCCCGAGACACCCTTTAACCTCCGTGCAGGGTTGCCCCCGCTTCCCCGCAGTGACAGAGGAGCAGCTCACAGCGGGACATCCATTTACGAGCATATCAGAGAGCGGGGCACCCCCCCATTGCCACCGCTGCCACCCCCCAATAACCGACACCGGGCACAGCTCTGA

Function

GO: NA

KEGG:

id description
K08273 SH2D2A, VRAP; SH2 domain-containing protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171737 lncRNA downstream 7558 17682207 ~ 17684183 (-) True G136623
TU171729 lncRNA downstream 27571 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 47983 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 60913 17628887 ~ 17630828 (-) True G136605
TU171682 lncRNA downstream 70554 17620139 ~ 17621187 (-) True G136578
TU171805 lncRNA upstream 23441 17720726 ~ 17723415 (-) False G136666
TU171905 lncRNA upstream 214953 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 244187 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 415391 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 443466 18140751 ~ 18179687 (-) True G136826
AMCG00012408 mRNA downstream 42715 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012409 mRNA downstream 55880 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012400 mRNA downstream 164207 17526875 ~ 17527534 (-) True AMCG00012400
AMCG00012398 mRNA downstream 168662 17519655 ~ 17523079 (-) True AMCG00012398
AMCG00012399 mRNA downstream 180649 17507924 ~ 17511092 (-) True AMCG00012399
AMCG00012416 mRNA upstream 60049 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012414 mRNA upstream 70125 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012419 mRNA upstream 85202 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012421 mRNA upstream 131722 17829007 ~ 17842851 (-) True AMCG00012421
AMCG00012422 mRNA upstream 145923 17843208 ~ 17852603 (-) True AMCG00012422
TU171745 other downstream 3229 17686332 ~ 17688512 (-) True G136625
TU171623 other downstream 187755 17503618 ~ 17503986 (-) True G136544
TU171593 other downstream 257628 17416574 ~ 17434113 (-) True AMCG00012393
TU171572 other downstream 310146 17380180 ~ 17381595 (-) True AMCG00012391
TU171426 other downstream 448914 17233928 ~ 17242827 (-) True G136408
TU171807 other upstream 23441 17720726 ~ 17724068 (-) True G136666
TU171825 other upstream 62694 17759979 ~ 17761454 (-) False AMCG00012416
TU171826 other upstream 70775 17768060 ~ 17770966 (-) False AMCG00012414
TU171956 other upstream 400895 18098180 ~ 18100627 (-) True AMCG00012437
TU172031 other upstream 508090 18205375 ~ 18237256 (-) True G136837

Expression Profile