RNA id: AMCG00012419


Basic Information

Item Value
RNA id AMCG00012419
length 2010
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00012419
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17782487 ~ 17795215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGTCCAGTAACTGCGAGGTGCTGACCACGCTGACCCCCGACACGGGGCGCATCCTATCCAAGCTGCACGCCGTCCAGCCGCGGGGCAAGATCAGCTTCTGCACCGGCATCAGAGTGGCACACTTGGCTCTGAAACACAGGCAGGGGAAGAACCACAAGATGAGGATCATTGCCTTCGTGGGCAGTCCTGTGGAAGACAACGAGAAGGATCTGGTCAAGCTGGCAAAGCGACTCAAGAAGGAGAAAGTGAATGTGGACATCATCAACTTCGGAGAGGAGgAGACGAACACAGAGAAGCTGACGTCCTTCATCAACACCCTGAACGGGAAGGAGGGCTCCGGCTCCCACCTGGTGACGGTGCCCCCTGGCCCCAGCCTGGCCGACGCCCTGCTGTCCTCCCCCATCCTGGCCGGGGAGGGTGGCGCCATGCTGGGCCTGGGGGCCAGCGACTTCGAGTTCGGGGTCGACCCCAGCGCGGACCCCGAGCTGGCCCTGgcGCTGCGTGTGTCCATGGAGGAGCAGAGGCAGAGACAGGAGGAAGAGGCTCGCAGGGCCGCGGTTGCCTCTGCCGCCGAGGCTGGCATCCCCACTCCCACTGGAGACgAGTCGGAGGAGGCGTTGCTGAAGATGTCCGAGTCGCAGCCGGAGAGGGGGACGCCCGGCCTGCCCGACTTCAGCAGCATGACGGAGGAGGAGCAGATCGCCTACGCCATGCAGATGTCGCTGCAGGGGCCAGAGTTCGGGCAGGCCGAGCCCATAGACATGGACACTGGGGCAGCAATGGACACAGCCGAGTCGGCCAAGgagGAGGATGACTACGACGTGATGCAGGACCCTGAGTTCCTGCAGAGCGTGCTGGAGAACCTGCCCGGCGTGGACCCCAACAACGAGGCCATCCGCAACGCCATGGGCTCCCTGGCCCCCCACGGCACCCCCAAGCCTGACGGCAGCAAGAAggacaaggaggaggaggagaagaagaaataaaccgcgggggaggggggacaaCAGGACGGGTGGAGGAGATTGACGGACTGAGAGAGTCCCTGAGACGGGAAGACATTTAGACGGCCAAGACTtaatgataaacacacacacacacacacacacaggaattaACATCAAGATGTATTCAGACACtcccaatacacacacacacacaaaattgaTTGACttactcacacatacacacgcgtTAACCTGAAGATGtatccagacagacagacggacagacagacacacagctggTCCTGGAGAGAATGCAGCCCCTGCAGGGATTACAGGGAAACCCCCTCTCTACACAGGGAGTGGAGATCGAGAACAATTAAGATGGtaattgattcaattaagcatTTACCAGCCCAGGGTGGAGTGAAAAGCAGACGACCAAGCCAGACTGTCCTTACCTTTTGCTTTTTGCCTTCTTTTGTATTGACCATAATAAATCTAAAGAGAGCAATGTGGTCagtccctcctctctccctctccccccctccattCCTCCATCTTTCTTTGCCCTCATGCCCTTCTTTCAGCCCCTTCTCTATCAACAAAGGCTGGCTCATATGTCACGAGGGGGCAGCTGTGGTCCTGGATGCCCATGGGAAATGCAGGGATGTCCTGGAGAGCTAGTGTCAGTGGGGGTCTGGTTTTCAGTCAATCCAGGCTGGCTATTGCATCATCAAACCAATTAGCTACTAATTGACAGCTGAGAAACGTGATGGGccgtgtctctccaggaccagggctggagaccctgctgtactatAGCTCTCAAGGACCGGGGCTCTGTGGGAAGTGGGCCCTGAAGGGAAGGCTGGGGTGTGGATATTGGGAAGGCTGCATGGTTGAATGGTTTAGTCTGATAACAGAAAtaaccagaaaagaaaaaaaaatacttgtactgtttttcttcagtttttctttgtttttttcttcccttgttGGTGGGGGAAACTCATAAACTTAttgtacaaaaaagaaaatacaataaaaaaattaaaatgaa

Function

GO: NA

KEGG:

id description
K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171805 lncRNA downstream 59072 17720726 ~ 17723415 (-) False G136666
TU171737 lncRNA downstream 98304 17682207 ~ 17684183 (-) True G136623
TU171729 lncRNA downstream 118317 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 138729 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 151659 17628887 ~ 17630828 (-) True G136605
TU171905 lncRNA upstream 117023 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 146257 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 317461 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 345536 18140751 ~ 18179687 (-) True G136826
TU172125 lncRNA upstream 624794 18420009 ~ 18493905 (-) True G136915
AMCG00012414 mRNA downstream 3365 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012416 mRNA downstream 17926 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012415 mRNA downstream 85202 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012408 mRNA downstream 133461 17647172 ~ 17649026 (-) True AMCG00012408
AMCG00012409 mRNA downstream 146626 17634857 ~ 17635861 (-) True AMCG00012409
AMCG00012421 mRNA upstream 33792 17829007 ~ 17842851 (-) True AMCG00012421
AMCG00012422 mRNA upstream 47993 17843208 ~ 17852603 (-) True AMCG00012422
AMCG00012420 mRNA upstream 60105 17855320 ~ 17860790 (-) True AMCG00012420
AMCG00012425 mRNA upstream 106341 17901556 ~ 17909492 (-) True AMCG00012425
AMCG00012427 mRNA upstream 115189 17910404 ~ 17918425 (-) True AMCG00012427
TU171826 other downstream 11521 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 21033 17759979 ~ 17761454 (-) False AMCG00012416
TU171807 other downstream 58419 17720726 ~ 17724068 (-) True G136666
TU171745 other downstream 93975 17686332 ~ 17688512 (-) True G136625
TU171623 other downstream 278501 17503618 ~ 17503986 (-) True G136544
TU171956 other upstream 302965 18098180 ~ 18100627 (-) True AMCG00012437
TU172031 other upstream 410160 18205375 ~ 18237256 (-) True G136837
TU172106 other upstream 580115 18375330 ~ 18378297 (-) True G136900
TU172290 other upstream 1237388 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 1646712 19441927 ~ 19507394 (-) True G137199

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028869 False 1392 mRNA 0.49 10 NC_007130.7 10871601 ~ 10881508 (-)
rainbow trout (Oncorhynchus mykiss) LOC110496795 True 392 mRNA 0.49 5 NC_048582.1 30760567 ~ 30762897 (+)