RNA id: AMCG00012420


Basic Information

Item Value
RNA id AMCG00012420
length 2031
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00012420
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17855320 ~ 17860790 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCAACTGATTGAGGTGATTCCTTGTAAAATCTGCGGAGACAAGTCATCAGGAGTCCACTATGGGGTCATCACCTGCGAGGGATGTAAGggTTTTTTCCGGCGCAGCCAGCAGTCCAGTGTGTTGTACTCCTGCTCCCGGCAGAAGAACTGCCAAATCGACCGTACCAGCCGGAACCGCTGCCAGCACTGCCGGCTACAGAAGTGCGTCGCCCAGGGGATGAGCAGAGacgCCGTGAAGTTCGGTCGCATGTCGAAGCGCCAGAGAGACACTCTGTTCGCTGAGGTGGAGCGGCACAGGCAGCAGCAAAAGCTCCAGCACAGCCCCGGGGAGGCCGAAGTGGCCGTACCCTTCCCTAGCAAGGAGCTCCGGGATGGGCAGCCCCGGCTAGATGAGCCCCCAGCCTCGGCCTACCCCTTCAACGGAGCCGGGGACTCCAACGGCCCGGCCTACCCGTCCGAGGGGCTCACGTGCCAGGCCTGCTCCCCGGGCGAGTCCCAGGCTCCCATCACAGTGGACTTCTACAGCAACCTGCTGTCAGGACTGGAGCCCCCGTCCTCATCCCAGCTGCAGACAGaGGAGCTGTGTGCAGGGGTGcccatGGAGGAGATGTGGGAGCGCTGTGCCTGCCGGCTGACCGATGCCATCGAGTGGGTGGTGGAGTTCGCCAAGCGCACCCCCAGCTTCATGGACCTCAGCCAGAACGACCAGATTGCCCTGCTGAAGGCCGgctctATGGAGGTGGTACTGGTGCGGATGAGCCAAGAGGTCGCGCTGTTCTCTGCCCTAGTGCTCATCAATCCAGACCGTGCTGGCCTGCAGGACAGGGGCCGAGTGGAGAGGCTGCGCAGTCGCGTGGAGCTGGCCTTCACCCACACCCTGCAGAGGAGCCAGCATCACAGCCTCATCAgcaagCTGTACCAGAAGGTGGCGCTGCTGGGTGTGGTGTGCTCCCTGCACATGGAGCGCCTGCGCGTCTTCTCCCGCATGCACCCCCTCGTCGTGCACTCGCTCTTCCCCCCGCTCTACAAGGAGCTGTTCGCCGCCGATGGGGAGCCCCCGCTGGCCAAGGACGCCAACTGCGGCCCGCACTGCCTGTACACCCACACTGACTCACACTGACATAGTGAagcactgactcacacacacagtcacactcactcacactgacacactcacactcacactcacactcacactcacagatGTCCCTATGCTGATATATACCCGGGGGACAGATACaggaagtctctctctctttctatcaaCCTATAAATACAAAGTCTATTTATGCATctattgatataaatatatttttgcaaaccGAAGAGGTATAAATTACCCTCATTTTGGATGGCAATAGGATGTGACTGTGGTGGGAATATTGACAATACAGGGCAGTGGAAGGGATtttcaaacaatgtttttttttttccaaagccGCCTTCACCAGCAGACAGAGATGTGCAGATCACTGGATGTGAttatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgagaGTGTCTGGGAGTGTGTATGTTTGTCTGAGTATGTGAGTATGTgagtatgcatgtgtgtgtgtgaatgttagCTCCTTACACCCCCCACAGACCCTGTACACGGGAAAGCCGTGTGAATGACCAGTGCTTGTGGATCCCATCCCACACAGCCCAGCAGCCACTGGAGTGAGCGAGGCATGTGTCACTGAAACAGCTGGGGCAGGAGTGGGaggacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtaatgAGTGTTACAGTATCACAGAGGAACAGATTtccatttcaggtttttttatGAGTTACCATTGTATATAACCAACATAATGAAGgctgttattattgtcattattattattattgttattattattgttgttgttgttatttggggtcaatctgtttttatttggtccAAACCTCACCCTGTAgcacttctgttttctttggttgtaattatttgtaacGAGGAGAATTGCAATAAAACCTGTC

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171805 lncRNA downstream 131905 17720726 ~ 17723415 (-) False G136666
TU171737 lncRNA downstream 171137 17682207 ~ 17684183 (-) True G136623
TU171729 lncRNA downstream 191150 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 211562 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 224492 17628887 ~ 17630828 (-) True G136605
TU171905 lncRNA upstream 51448 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 80682 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 251886 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 279961 18140751 ~ 18179687 (-) True G136826
TU172125 lncRNA upstream 559219 18420009 ~ 18493905 (-) True G136915
AMCG00012422 mRNA downstream 2717 17843208 ~ 17852603 (-) True AMCG00012422
AMCG00012421 mRNA downstream 12469 17829007 ~ 17842851 (-) True AMCG00012421
AMCG00012419 mRNA downstream 60105 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012414 mRNA downstream 76198 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012416 mRNA downstream 90759 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012425 mRNA upstream 40766 17901556 ~ 17909492 (-) True AMCG00012425
AMCG00012427 mRNA upstream 49614 17910404 ~ 17918425 (-) True AMCG00012427
AMCG00012424 mRNA upstream 58341 17919131 ~ 17929271 (-) True AMCG00012424
AMCG00012426 mRNA upstream 103631 17964421 ~ 17980764 (-) True AMCG00012426
AMCG00012430 mRNA upstream 175890 18036680 ~ 18053021 (-) True AMCG00012430
TU171826 other downstream 84354 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 93866 17759979 ~ 17761454 (-) False AMCG00012416
TU171807 other downstream 131252 17720726 ~ 17724068 (-) True G136666
TU171745 other downstream 166808 17686332 ~ 17688512 (-) True G136625
TU171623 other downstream 351334 17503618 ~ 17503986 (-) True G136544
TU171956 other upstream 237390 18098180 ~ 18100627 (-) True AMCG00012437
TU172031 other upstream 344585 18205375 ~ 18237256 (-) True G136837
TU172106 other upstream 514540 18375330 ~ 18378297 (-) True G136900
TU172290 other upstream 1171813 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 1581137 19441927 ~ 19507394 (-) True G137199

Expression Profile