RNA id: AMCG00012422


Basic Information

Item Value
RNA id AMCG00012422
length 1896
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00012422
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17843208 ~ 17852603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataactctctctctcccacacacacttaaaaggtcagagagagagagagaaatcagtcTGGGACACATTTCCCGTCTTGCTGCCTTTCCCCAGTTTGCAGGCGCAGGAGGTGGAGAAGAGGAAACGGAGGAAAGAGGAACAACCAGCGAAGAAACAAAGCCCGCAAACCCACATCTAGGCTCTTCGTAGTCGTTTCAGGACAGACATCTGcgtcggggagggagaggagagggacacTGAGAGTGGCCATGCTGCGCGTCGCGCTGCTGCTGTGCTGGCTCTGTGTGCTGCGGGTGTCCTGCACGGCGCCTGAGCGAGATATCACAAAAGATGACGACATGGACCCGTTGCTCCAGAGACAGGTGCCAATTGACCCTTCCATCCTTCAGAAGCTGAAAGGGGAGCCTGATATCACCCAGAGAGAGGTGACCTTTGAACTCCCTGATATCCCATTGAGAGccccccacccccacgaGGTCCCCTTCCCCCCCGCGCGCCCCTCCGCCGCCAACCTCCCCAACATCTGTCAGCATGGAGACCGCCGCCCCCGCTACCCGCTCCCCTCCCTGCCCACCACCGGCTTCGGCCGCGAGAGTCGCCAAGGTGACTGCATCAACCGCCTGGAGTCCTGCCACTACCACTGCTGCCGAAAGAAGGGGGAGGCCATGTGGGACTGCTTCCAAAAAGATGCTCCTGACACCACCTACCTGCCCCCACCAGGGTCAGAGGTCCGGGACATGGACTTTCCACACGCCACTGCAGAGCCCGGCTTCCAATGGGACCCCGAAACCTGCCAGAGTTCCAGGGTGGTGCTCCATCCCCGGTCCTCCAAACAGGACCTCATCCCCAATCTCAGCTTCCCCCCCGGCCAGCCCTCGCCCTCCAACATCCAGCGGATCTGCCAGCTGCGCAAGCTCCGCCCCCGCTACCCTTCGAAGTGCCTGCCCCGCTCTGGCTACGGCTGGTTCACCCGCCAGGAGCAGGGGGACGGGCTGTTCCGCTGCTTTGCCGACCGCGCCCCCCACCCCGGCTACGACCGCGAGGTCCGCAACTTGAGCCTCTCCACGCCAACGCCCGCAGCCCTGGACGCCGTCTGCGTGGAGCACAAGCTGCTGAGCAAGAAGTCCCCAGTGCCCGAACTGCTGATGAGGCTGAAGACACAGTGCTGCCCCTTGCGGGAGCCGCGCAGGACTGCGTGTGCCCAAGTGGAGGTCCAAGGGCTGCCGGAGCACCTCTGTGGCCAGAGGATGAGCGACTGGACGGACCGCCGGGCCTGCTGCCGCCTGCCCCTCCACAAACGGGCCCGCTGCATCTACGGCAACAAGCTGGAGGCCGTCTCCATAGCGACTGCCTCCCCGGATCGCAACAAGTGTCCTCTGATCTGAGCCTGTGGAGGAGGGGTGGGGAAAAATAGTCAATCCGTAAACAAATTGGACCTCTCTTGGCACACATAAACAAATCACACTTTGCGACACACTTCCCCAATCTGAACGCAGAGGACAGCCACAGCACAGTCGGTGTATACCTGCTCCTACACGCTCTGTCCCAGTGTACTGTACAACCGCTAGGAGAGCTAACATAACCGagcttattttattataattatcaacCTGTGTGTGCCCTACTCTTACCTAGCATATAATTACTCCCAGAAGTCAACCCACAATGCAGCAGTCTCTAGACGTCACTTGCCAAAATCCTGCCTCTCTCCACTGGTGGGCTTCAGCGACAAATACACCGAGGGGACGGTGTCACGGTCTCCAGTGATGCTCTCCacactacattttatatttgcaattaATTGGGAAGTTTATATCTATTTCAGGGTTGCGGGGGTGGGACGGGGGAACTCAATGTTGTACCCTCAcccataaataaaaaacatataaattcta

Function

GO: NA

KEGG:

id description
K23867 ECM1; extracellular matrix protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171805 lncRNA downstream 119793 17720726 ~ 17723415 (-) False G136666
TU171737 lncRNA downstream 159025 17682207 ~ 17684183 (-) True G136623
TU171729 lncRNA downstream 179038 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 199450 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 212380 17628887 ~ 17630828 (-) True G136605
TU171905 lncRNA upstream 59635 17912238 ~ 17971853 (-) True G136746
TU171911 lncRNA upstream 88869 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 260073 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 288148 18140751 ~ 18179687 (-) True G136826
TU172125 lncRNA upstream 567406 18420009 ~ 18493905 (-) True G136915
AMCG00012421 mRNA downstream 357 17829007 ~ 17842851 (-) True AMCG00012421
AMCG00012419 mRNA downstream 47993 17782487 ~ 17795215 (-) True AMCG00012419
AMCG00012414 mRNA downstream 64086 17767410 ~ 17779122 (-) True AMCG00012414
AMCG00012416 mRNA downstream 78647 17757334 ~ 17764561 (-) True AMCG00012416
AMCG00012415 mRNA downstream 145923 17691741 ~ 17697285 (-) True AMCG00012415
AMCG00012420 mRNA upstream 2717 17855320 ~ 17860790 (-) True AMCG00012420
AMCG00012425 mRNA upstream 48953 17901556 ~ 17909492 (-) True AMCG00012425
AMCG00012427 mRNA upstream 57801 17910404 ~ 17918425 (-) True AMCG00012427
AMCG00012424 mRNA upstream 66528 17919131 ~ 17929271 (-) True AMCG00012424
AMCG00012426 mRNA upstream 111818 17964421 ~ 17980764 (-) True AMCG00012426
TU171826 other downstream 72242 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 81754 17759979 ~ 17761454 (-) False AMCG00012416
TU171807 other downstream 119140 17720726 ~ 17724068 (-) True G136666
TU171745 other downstream 154696 17686332 ~ 17688512 (-) True G136625
TU171623 other downstream 339222 17503618 ~ 17503986 (-) True G136544
TU171956 other upstream 245577 18098180 ~ 18100627 (-) True AMCG00012437
TU172031 other upstream 352772 18205375 ~ 18237256 (-) True G136837
TU172106 other upstream 522727 18375330 ~ 18378297 (-) True G136900
TU172290 other upstream 1180000 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 1589324 19441927 ~ 19507394 (-) True G137199

Expression Profile