RNA id: AMCG00012424


Basic Information

Item Value
RNA id AMCG00012424
length 3189
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00012424
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17919131 ~ 17929271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGCAGCTGCCTGGGGAGCCGGCGCAAGAAAGGCTGCTGAAGaggacacacacgcacgcacgcaacCATTGACTGCCACATATATAAAACctatgaaaaactgaaaattcaAGACAGATTGACACACCAATTGAACCAGACCTAGATCCCCAAACAATGTCTTCAAGGAAGAAAGATGTCCTTTCCCTCAGTTACAAGAGTTTGGAGGAGCGGATTATTGACTTTTTAATACAGACGGAGGAAGGAACCAGTGCACTAAATATCGCCAAGGGTGTGGGACTCAACTGCGCCAAAGATGTCAACCCACAGCTGTACAGCCTGGAGAAGAAGGGGCATCTGCAGAAGACTGAGGGCAGCCCCCCAAAGTGGTCTCTAAAGCCGAGGGAGCCGACCCAGGAACCACAGGCAAGCAGTACGCCCCCTGAGTCCTCCGATGTAGACCAATCGCTTGTGCTCAGTTTACTACGAACAGATAGAGGACAAACAGCCCTCGAAATTGCCAAGAAATTGAAGGCCAACCCCAAAAGTGTGAAAAAGAAGCTGTATGATCTGCTGTCGAGAGGGGTTGTGGAGAAGAGTGAGGACAGCCGCGTTTCTTGGAAGAGGAGTGAGAAGAGcAGTTCCACGGAAAATTCTGAATTGCTAAACTGTGCTGAGATTGACTTGGAAGAGTCATCCATTGGGAACTCGTCTGCAGAGGCAAGCCGTAGTGTAACTGGTGTCTTTAGGTTTCAGGAGGACTATGACTCGATTGAGTCCCTTGGCACAGGGGCTTATGGCTTTGTTTATAAGGCAAGACGAAAACTGGAAGATGTCTTCTTTGCTGTGAAGATTGTAAAGTGTAcgagGAAAGCTCTGCGTGAAGTGAAGGCGTTGGTGGGGCTTCATCACGAGAACATTGTTCGCTATTACACCTGCTGGGAAGAAAATACACGATATGAAGTTCCAAAGTGTGAAAGAAACAACAGCCTTTCGCCTGAAGGTGAAGAAGACACGGAAGAGAGCTCTGAAAGCCCTGGCAGCTGCTCCTCTGGCCGATACCGATACCTTTACATTCAGATGGAGCTGTGTGAGAAGGGTACCCTGAGGTCATGGATTCAGGAGAAGAATTATGGAAAGACCGCGAGCAGCGAACAGGAAATGCAGAGGCGCAGAAACGACGCTCTGAGTGTATTTAAGCAGATCATCAATGGAGTGAAACACATTCATGCGAAGGATCTCTTTCACCGAGACCTGAAGCCAGAAAACATATTCCTTGGGAATGATGACAAAGTCAAGATCGGAGATTTTGGGTTTGTGACGTCTGCCAGAACAGACAGTGACCGGACTACTGACAAAGGGACGTCTTTCTACATGAGCCCGGAACAGtgtgAAAATAACTATGACCGTAAGGTGGACATATACGCCCTGGGACTGATTTACTTTGAACTCCTGTGGAAAGTTAACACGGGCCACGAAAGGTTAAAGAAACAGATCATTATGGCGATGCTCTCCAAGAGCCCGGAAGGCAGACCGGAGGCCTCAAAGATCGCTGAACACCTTGATGCCTTTATAGCCGAGTAATCAGAGTTCGGTACTGGGCTCGGGGGCAGCAGTGGCATCTCTGCGGTCAGGAGTCCGACCCCCGCTCTCCCATGTGGGTTCCTTCGCTGTTGCTATTGGGCATCGAGTTCCATTAACACAGTGCTGTCAACAGCCCTGCACCTACAGCAGGGCTGGCGATGAGGATCATGACATGGATACGATGACATCATCAACCTCTAGACTTTCAGCCCCCCAATCAGGTTGCCTTCCTCTTGGAGTGTCTGTGGGAGATGGACATTCAGATCCAAGCAAGATCTGCCACTAAACTCTCACACCGCAGGGTTTCCCCAAGCTATACTCCGCCTCAGTTTACATGTGTCCCATTTCCACTAGGCGGTTCGAATCCTGGGCGTTTCCACTGtggctcagctgcacctccgcctgtgcccgAACTAGTTTCATGAGGCACTGTTTTTTACATCATAGCGGCTGAGTGCCAAACTGCTCCGGGACACGTACTGTGACGTCCCTGATGCAGCCAGACGCAACGCCActgcattctgaaattgtaactacagtaatggcgtCTGCTTGAGCATTTATTATTGTACGATCACACAGTGCCACACAGCATCAATTGCTTGGAGCAgtaagtgtttgaaaagatcacaAATATCCCACAAATGAGTGGAAATGCTGGCAGCAAAGTTTAGGTCTACGGTTACAGCCCGGCTAGGTGGAGCTGCACCTAAGCATgaccagtggaaacggggtaatAGTCAATTCTCACATTCTACCTTCCTTAATCCAGTTCACATTACTTAACGGTTACACTTCCAATCCTGTACCAGCGCCCTGCACTTTGACAAGACAGAATTCCCCACTTAACATGCAgacaagtgttttttgttttttttttttttacacaaaagaACCCTTTTAACATATCATGGATTTAGTAAAATgctcatttttatatattaaccctttattttatttctttttcactATAATCATGGGTAGGTTAGATTGGAATTGGCCTCCAGTTCCACAGGTGTTGGcagattaaatcacatttatgaTCTGATTAGCAGGTGAGTAACAAACAAACTGTGTCCTGTTTTACATGGATATACACTTATGTGGTGTGAGATTAGCTTAACCAGCTTTAAATTGTTTCCCAGTGCAACTTAAATCCGTTGATATTAGACTGGAAAGTGTCTACAAAGGCTTCCATTGATCATGTCAGAGATGAGGACAGATTTGCAGTTTTAAGTTTACAGATTAGAGGTTgggaagtcatacttgagttACTGTATATTCAATAACTttgatgaaatgaaaaatgtgtattctATGTATTTGTATCGTCTCCACATCCAGGGACTGTCTAACAATTACGATTCTCGTTATTCAAGAAACACGAGGTCTCATCAATAAATGTCCATCTCTCGTTATACGTGCCATTgtactgcaataaaataaaatgataaaatactaTGACTATATGAAATGTGTAACCAGtctttatttcactgtaaaaaaaaaaaaaaaaaaaaggttaataaaagGAAAGGAGCGGCACTGTGGTcagtgagagacaggagaggtggatgCAGAGAGGACGGTGTGGTcagtgagagacaggagaggtggatgCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171805 lncRNA downstream 195716 17720726 ~ 17723415 (-) False G136666
TU171737 lncRNA downstream 234948 17682207 ~ 17684183 (-) True G136623
TU171729 lncRNA downstream 254961 17663455 ~ 17664170 (-) True G136616
TU171717 lncRNA downstream 275373 17643511 ~ 17643758 (-) True G136607
TU171713 lncRNA downstream 288303 17628887 ~ 17630828 (-) True G136605
TU171911 lncRNA upstream 12201 17941472 ~ 17963244 (-) True G136750
TU172002 lncRNA upstream 183405 18112676 ~ 18112903 (-) True G136820
TU172012 lncRNA upstream 211480 18140751 ~ 18179687 (-) True G136826
TU172125 lncRNA upstream 490738 18420009 ~ 18493905 (-) True G136915
TU172112 lncRNA upstream 510308 18439579 ~ 18442587 (-) True G136906
AMCG00012427 mRNA downstream 706 17910404 ~ 17918425 (-) True AMCG00012427
AMCG00012425 mRNA downstream 9639 17901556 ~ 17909492 (-) True AMCG00012425
AMCG00012420 mRNA downstream 58341 17855320 ~ 17860790 (-) True AMCG00012420
AMCG00012422 mRNA downstream 66528 17843208 ~ 17852603 (-) True AMCG00012422
AMCG00012421 mRNA downstream 76280 17829007 ~ 17842851 (-) True AMCG00012421
AMCG00012426 mRNA upstream 35150 17964421 ~ 17980764 (-) True AMCG00012426
AMCG00012430 mRNA upstream 107409 18036680 ~ 18053021 (-) True AMCG00012430
AMCG00012436 mRNA upstream 144120 18073391 ~ 18090248 (-) True AMCG00012436
AMCG00012437 mRNA upstream 168906 18098177 ~ 18102329 (-) False AMCG00012437
AMCG00012435 mRNA upstream 188701 18117972 ~ 18130574 (-) True AMCG00012435
TU171826 other downstream 148165 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 157677 17759979 ~ 17761454 (-) False AMCG00012416
TU171807 other downstream 195063 17720726 ~ 17724068 (-) True G136666
TU171745 other downstream 230619 17686332 ~ 17688512 (-) True G136625
TU171623 other downstream 415145 17503618 ~ 17503986 (-) True G136544
TU171956 other upstream 168909 18098180 ~ 18100627 (-) True AMCG00012437
TU172031 other upstream 276104 18205375 ~ 18237256 (-) True G136837
TU172106 other upstream 446059 18375330 ~ 18378297 (-) True G136900
TU172290 other upstream 1103332 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 1512656 19441927 ~ 19507394 (-) True G137199

Expression Profile