RNA id: AMCG00012428



Basic Information


Item Value
RNA id AMCG00012428
length 339
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00012428
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17937937 ~ 17941562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGTTCAATAAAGGGGTGTTTAAACTCATCCACAAGCACAGCAAGAGCCATGCACGCACCTGGCTGGGGGGCTTCCGCTTCCCTCAGGTAACAACTGACACTGTGAGACTGGGGGAGTGGGGGAGTCTCAGATCTAATGCGTTTATGTGGATTGATGGAAGCAGCTGGAGTTATGAGAACTGGTCTCCTGGGAACCCTGATAATACTAAGGGAAAGGAGCACTGCATCGAGATGAACTGGTCCAAGAATGAGAAGTGGAACGACCACGTCTGCACTGAACTCAAACCCTTTGTCTGCAAGATCCGCATTCCTACAGCTGAGGAGAGCAGAGACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171869 lncRNA upstream 36281 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 273767 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 284475 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 288830 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 301976 17623113 ~ 17635961 (+) True G136564
TU172036 lncRNA downstream 320335 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 353653 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 492008 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 526244 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 531671 18473233 ~ 18474916 (+) True G136873
AMCG00012418 mRNA upstream 123373 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012423 mRNA upstream 142693 17792526 ~ 17795244 (+) True AMCG00012423
AMCG00012417 mRNA upstream 177655 17755706 ~ 17760282 (+) True AMCG00012417
AMCG00012411 mRNA upstream 186482 17730997 ~ 17751455 (+) True AMCG00012411
AMCG00012412 mRNA upstream 224627 17700146 ~ 17713310 (+) True AMCG00012412
AMCG00012429 mRNA downstream 61077 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012439 mRNA downstream 188722 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012432 mRNA downstream 221014 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012431 mRNA downstream 232448 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012440 mRNA downstream 288183 18229745 ~ 18237188 (+) True AMCG00012440
TU171871 other upstream 34127 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 94016 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 142720 17792251 ~ 17795217 (+) False AMCG00012423
TU171770 other upstream 170406 17764145 ~ 17767531 (+) True G136641
TU171771 other upstream 171446 17764145 ~ 17766491 (+) False G136641
TU171980 other downstream 190845 18132407 ~ 18134381 (+) True AMCG00012439
TU172065 other downstream 443727 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 597983 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 1228186 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 1296127 19237689 ~ 19238958 (+) True G137111

Expression Profile