RNA id: AMCG00012431


Basic Information

Item Value
RNA id AMCG00012431
length 2798
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00012431
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18174010 ~ 18179817 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCGCTGGACAGGGATAGCTGTGCATCCGCGGATATACTTTCTCTTCACGGCCGGATCGGGAGACCCTGTGAGCGGCGATGACTGCGCGGAGGCAGGCCCAGCGCGGATAACTTCGGCAGCACCCTTGGACTGAAGACTGAGGACGGTGTCCCTCGCGTCCAACAGGTCCCCCCTCTCCCTGCAGTGGACAATGGAGAGCGACTGCAGGATCTCTGTGATCGGCCTGCCCCCTCCCTCGCCCCTCTGTGCGGGGCTGGCATGTCTGCCCCGCTCCCTTGCCCTCTACAGCCTGCTGTGGAGCCTCGTATCTGTCAGAGTTTTGGGAGTCCCTGTGTCCAGTGAAATGAAGACGCCAGTGATGTCCGCCATGGCCACGCCCTGCTGGCAGGTGGAGGAGTTTGTGGTCGCCCGGGAGTGCTCCCAGTGCAACGCCTTCCAATCTAAGTCGTGGGCAGCGTGCACACAAACTGGGTATGTGGAGATGATCAACTGTGCCAAGTCCAACAAAGACGAGTACAAGAGCTGCCGCTCGGCCCTGATGGAGGAGAGCCGCTTCTGGAGGTTCGAGGGCACCGTGGTGGGCCTGACCGTGGTCTTCGCCCTGCTGGTGGTGATGCGCCAGCGCGCCCTGGACCGGCTGGCCTCGGAGAAGGTCCGCAAGCAGATTGAGTCCATCTAGAGGCCCGGGTGGGGGGGGCGCTGGCAAAACGATGGCCAGTCCAGCCGACCGGCCCTAGGACCACGACAACCTGGGGAAAAACTACACAAAACGGTGTTTTATAATGATGTTTTAATAATCTAGGAGGGTCTCCTGCCCCCTAGTGGTGGAGACGAGAAACTGCTCACCACCTGGCTCTTTTTGAAACTTGGAAAAGATGTGTGGACAAGATGGCGACGTTAGGAAGGCCTGCTTTAACACGTGGAGAGAGCGCAGTTTGGGGAaggaagcaaggaaccaggcCTGCTTAGTCAGAGGACTAATCCTGGACAACAACAAGACACTGACTTTAGtcctgtgttttttgtgtgctttttttaaatgcatcttacaGTTTGGATTGACTGAGATCACAAGAGCTCTTTTGAACGGGGCCGGTGGCAAGAACTCGCCTTTCCCAGTTCGAGGGACAGGTGTGGCGGTGGTAGTGTTACAGAGGGAGCCCAGAGGCTCATGGGAATCGGAATGATGACACTGCATTGAGGAGCAGGTTTAGTTTTACATATTTGGAATCCCTTTTTAAGACCTTCAGGATGTACGGATGAAATGTTATGGTGCCAGTCTTGAGCCGGCCTGGGTCTTTGTATGGCTGTAGCCCTCCAGGTGTTTGTTTGCCACATTAtgcaaaggagagagagattgtgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgattcagtGTGATTTCTCCTCTGATCTGAGCCAATTCTTAAAGCAcaccttcccccccccctccatggTACACGCTCCACAGGGGAGTTCTGAGCTCCTACAGGACACTGACGCGCCTCCACAGCTGtgtttatgttgtatttgtgtCAGTTTGTATTTACGTTTGAACGAAGGCCGTCATGTCTGAGTCTCCCTCCCATTCTCCGAGTGGGTgtgctgagtgtgtgtggggggttatTTACTGTGGGACGGCACCCTCGGACCCCGTTTCTTTCAGTTACTGTGCAACCGGCCATCGCCTGGGTCGGTCGACGCCGTGGAGAGGGTGCCAGGGTCAGAGGGGCTTTAATGACTTTCCCAGTTTAAAGACTTTCGGTCTTTGCCTTCATCTGTATTTTGCCTCTCATCTCTTAAAAagtgttggggtgggggggacggACTATATTCTGTCGGGACTGTATTTATTGGGATTTGTTcaatctgttttgtgttgtttctcatcaaaacaaatgaggaaatgggaaaataatgGTCTACAAATGCAGGATTTAGTCACTACTTTGGAAATAATGTATACTTAGGGTATTTctctaaataataatgatgaatacACTTGCACATGGTTGTAATATGCAGTCAGGACATCCCAGAAAATTGCTTAGACGTCTTTATCCTGCTATTTATCcccaatattattattgattttcattaatatttgtttattttaacttgtaCAGTtggtgcaatttttttttattattaatattcctccctctcgctctcatttgtccagatgttttattttattttttgcacattgtCCAACGTATGGTTTCAGAACAGATCCTTTGAGTTATTGGTGGGAAAAACAAACCCAGGTTTTCTAGTATTTAAGTCACCgcattgtaatattttgcaCCAAACtaagattgtgtttttttgttttttaatcacaattgacattttttaatgtcaaatcTTCCATTTGGAGGCAGAAGTCTTTAAAACCTTAGACTGCCAGCTGTTCGGTTAAATCACTGTTGATCTGAGCAGTTTTGAACGctaagtgtttttttccccatcccCAATGACTCTGTTAATAGTATACTGTAAATAACGTATTTTTATGAGAGATGTGAAGCATTTGTTGATATGAGCTGCCGGTCACCGGGAAGTGAACAAATAAATTCTGCATGGATCAATCTCACAGATTTTCCCTACAGTGTGTAACTGTCGGAGTATATATCTGAGGGTAGTGGGAGGAGAGAGATGTGTAAATTagacaataaaaacacttgctcgaaaatattgactttattaaaacatttacagtttgcAGCATTGGAGTCGAGGTTCAGCGAGGCTACAGGGTTCAGACTGATGGCTGAGATAAGCATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171869 lncRNA upstream 272354 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 509840 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 520548 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 524903 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 538049 17623113 ~ 17635961 (+) True G136564
TU172036 lncRNA downstream 82080 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 115398 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 253753 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 287989 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 293416 18473233 ~ 18474916 (+) True G136873
AMCG00012432 mRNA upstream 4266 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012439 mRNA upstream 39789 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012429 mRNA upstream 167236 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012428 mRNA upstream 232448 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012418 mRNA upstream 359446 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012440 mRNA downstream 49928 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012447 mRNA downstream 150107 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012446 mRNA downstream 173194 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012454 mRNA downstream 210014 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012451 mRNA downstream 222488 18402305 ~ 18414912 (+) True AMCG00012451
TU171980 other upstream 39629 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 270200 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 330089 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 378793 17792251 ~ 17795217 (+) False AMCG00012423
TU171771 other upstream 407519 17764145 ~ 17766491 (+) False G136641
TU172065 other downstream 205472 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 359728 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 989931 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 1057872 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1635108 19814925 ~ 19815617 (+) True G137252

Expression Profile