RNA id: AMCG00012432



Basic Information


Item Value
RNA id AMCG00012432
length 1263
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00012432
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18162576 ~ 18169744 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAGATGGACGCCGAGAACGGGGGGGTGTTTTTCGGCCAGAGGGAGGAGGACATGGGAATAGAAGGGGGCCTGAGCACTCGGGGGCCCTTCTCCTGCCCCGATTCAATCTACAGCGccagcccagagaaaaccctGGAGGAGTGGGCCATGGACCCCCACTGTGCGCTGAACGACAGCGAGTCGGAGGATGTCCTCCACACCATCATCAACCCCAACGACGTGTACCCCTCCTGCGGGGCTCCCCTGGAGTCAACCTCGGAGAGCGACAGCGGCATCTCTGATGACCCCCGGTCCGACAGCCCCCACGGGCCCCCCGCTGCCACCGCCCCTACCGTCTACCAGGTGGTGTACGACATCGGCAACGAGTGGAGCTCCCAGATGTTGATCCCCCAGTCTTGCATCGTCAACGAGCTGCCTCTGGTGCCGACGGGCAAATCCACTTCCGCCCTGTCAGTGCCCGCTGCCTCGCAAGATGCCAACAGCCTGGACAGCTTACCACTGTACCCAGATCTATGCCTGACAGAGGAGGAACAGAAGCTCCTGACCCAGGAAGGAATCTCTCTGCCCAGCAACCTGCCCCTTACCAAGGCTGAGGAGCGGATTCTGAAGAAGGTGAGGCGCAAGATCCGCAACAAGCAGTCGGCGCAGGACAGCCGGCGCAGGAAGAAGGAGGTGGCGGCCTGTTCGGCGCAGAACCACGAGCTCCAGAAGACTGTGGAGCAGCTGGAGAAGCACAACGTGTCTCTGTTGGCACAGCTGAGGGCACTGCAGTCCCTGATCAAGCAGACTGCAACCAAGGCCGCACAGACGGGCACCTGCATCATGATCATTATCTTCTCCCTGGCCCTGATCATCTTCCCCAGTTACAGCCCCTTCCTCTGGGGCCCGGCAGACGTAGAGGACAGCTACGCGCCTAAAGGAGTAATCTCCAGGAACATCCTGACCGACTCCGCCTCCTCCAGTCTTCCCGAAACTGGGGATGATGTCGTCGCTGCCGTTGGATATGGCCCCCTGCCCTTCTCCCCGGACACTGGCCAATCGGAATCTGCCGACCCGCCCCCCACGCTCCCACAGCAGCCAATCGAAACGCCGGAAGCCGCTCTCCAGGGGGACATGGCTCAGGATGAGGGCCAATCCAAGAATGGTTCATCGTTGCAGGCGGAAGACAGGACTAATCAGCTGGCACTGGACATGGGGCCCTCCAAAGCACAAGGGGGCGCCAGCATAGACTCTGCGAAACCTGCTCACGCTGACGAAATGTAG

Function


GO: NA

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171869 lncRNA upstream 260920 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 498406 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 509114 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 513469 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 526615 17623113 ~ 17635961 (+) True G136564
TU172036 lncRNA downstream 92153 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 125471 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 263826 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 298062 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 303489 18473233 ~ 18474916 (+) True G136873
AMCG00012439 mRNA upstream 28355 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012429 mRNA upstream 155802 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012428 mRNA upstream 221014 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012418 mRNA upstream 348012 17806559 ~ 17814564 (+) True AMCG00012418
AMCG00012423 mRNA upstream 367332 17792526 ~ 17795244 (+) True AMCG00012423
AMCG00012431 mRNA downstream 4266 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012440 mRNA downstream 60001 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012447 mRNA downstream 160180 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012446 mRNA downstream 183267 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012454 mRNA downstream 220087 18389831 ~ 18401677 (+) True AMCG00012454
TU171980 other upstream 28195 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 258766 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 318655 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 367359 17792251 ~ 17795217 (+) False AMCG00012423
TU171770 other upstream 395045 17764145 ~ 17767531 (+) True G136641
TU172065 other downstream 215545 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 369801 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 1000004 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 1067945 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1645181 19814925 ~ 19815617 (+) True G137252

Expression Profile