RNA id: TCONS_00009292


Basic Information

Item Value
RNA id TCONS_00009292
length 6343
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_004690
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 21298317 ~ 21553637 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGCTTCAAGATATCTACCTTTAGCGTTTGGAAGCCTACTACGCGACCAATTAGCCTATAATGCGCATTCTTGTTTATTGGCAACCTATACGactgcgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtacaCCAGTGCTCCGTCCACCTGTGCCTAGGTAACGTGATCACGCAATTAATGGCGGGAACGCGCACTCTGTTTCAGTGGTCCGCGTACCCGTTGCGCGCAGTAGTTCACCTCGGGGATTTCAGGAAATCTCAATATCTGTCTATTTCTTGCATGACTGGACTGGGATTTCAGTTGTTTTTTAATCTTTAGGTTCTTAAACTGTCGCATGGTGACAGGGTCAGACCAACGGAGACAGGCATCTTCGTGGCGTAACAAAAGCGGTTCTGGAACAGCAAACAACGCTTAAGTCGTTTTATGGAGGCTTGCGGGACGCAGCGAAACATTTCGTAAAGTGCGCGCACTGAGGATATCAGTCCAGACCCCCTTTATTTCGGAACGTAGTCTTGTTTGGATTTCAGCCGGTTTGAAATGTGGCGTTATGTCCTCGAGATAAATGTGCTATGTGTGTGATTTGGAGAGGATCTTGTGGAAGGTGTCCAGTGGGAAAGAGACTGGGTGGACTCATCTGCAACTGATCCCCGTTTTTCTGAGCGCAATGGACTTGGAATGAAGACAAAACATGGATataatctgggaaatatttattattcttcaaGCCAATCTCATTGTTTGCACTTCAGCTCAGCCAAATCCACCCAAAATCCATGAGGGATGGTGGGCTTACAAAGAAGTTGTTCAGGGGAGCTTTGTTCCAGTGCCATCATTCTGGGGGCTTGTAAATTCAGCTTGGAATCTGTGTTCTGTGGGGAAGAGACAGTCTCCAGTCAACATCGAGACCAGCCATATGATATTTGATCCCTTCCTGACACCACTGAGGCTCAACACTGGCGGCCGAAAGgttggagggacaatgtacaacaccGGCCGCCATGTTTCACTCCGACTGGACAAAGAGCACCTGGTGAACATCTCCGGTGGACCAATGACCTACAGCCATCGCCTTGAGGAGATCAGGTTACACTTTGGGAGTGAGGACGGACAGGGCTCAGAGCATCTCCTCAATGGCCAGGCCTTCTCTGGGGAGGTGCAACTTATACATTACAACCATGAACTGTACACAAACTACACAGAAGCTGCTAAAAGTCCAAATGGCTTGGTGATAGTGTCTATATTTATGAAGATATCTGAGACTTCGAATTCATTTCTCAATCGGATGTTGAACAGAGACACTATCACAAGAATAACATACAAGAATGATGCATACCTTCTCTCGGGGCTAAACATTGAGGAGGTGTATCCAGAGACAGCAAGTTTTATCACTTACGAAGGGTCTATGACAATCCCACCATGCTACGAGACCGCAACGTGGATTCTGATGAACAAGCCAATCTACGTCACAAAAATGCAGATGCACTCCATGCGACTGCTAAGTCAGAATCAGCCCTCGCAGATATTCCTCAGCATGAGCGACAATGTTCGCCCAGTGCAGCCTCTGAACAACCGCTGCATTCGCACCAACATCAACTTCAGCATGCAGGGCAAGGACTGCCCCAACAACAGGGCACAGAAGCTGCAGTACCGAGtgaACGAATGGCTGCTGAAATAGAGCCAGGATGCAGACCAACCCAAGAACACTAACAACATTGAAAAGGATGAAGAGGAAAAGCTCATGGATAAACAGAATGAAGACTGACACATGTCCTGCCAGAAAAAGTCATGatgttgtaaagaaaaaaaaaaacaaaaacaccactGCAAGAAGAGACTCTGCAAAGTTGGCAAAGAGTTCCAATTTCATACATCCAATCAAAACCAATGACATACCtacacaaatgttttgataccttTTTTTGGGAaagcaaacaaaatatatatatataacatgtattTCATAGGCTCTTCACGTATTGAACTGAATGTTTTTAGCCTTTGTACATATGGACAACTTGCTACCAATCTTGGGATAAAGGGACAGGACATTGAAGCACCCTACCAATACTGAGACATCCTTGAACATAACTGCATTCTCAATCTTTATTCTGGCTCGTGCTGTGGAGAACCGGAGCAGAGGCAGCCTTGCAGATTTATTATCAAGACAAAAACCATCATAAAGAAGACTACGGCGTGATGTTGTCcgtggagaaaaaaaagaaagtgtctTGGCCTTGTAAATATAATTATTCATGCTGAAAATGAAtatgtaaagataaaataaacatttaaaaaaaataataatatcagaaggaaaataaatgaaaaaaaaaagttgaatattttACGCTTGGCGCACTTTCTGGAGCAGAGCTGAtgcctttttttctgtttcattgTTTACAATGGTCATACACTGTGTTTGATTAATGTTATCGGCCCAATAAATGTGTTTGGAAAGttcattttttgtaaatatttttctctgtgtttggctGCTCATGTTAATATGCAGtacaaaactttaaaaagagGGGGAAAACATCCGCTGTGTTTGGTGCGAACATCTTAAGAGCTGCTTAGAAGTGAATTGTTCTATTTTTGACTGAAATCAAACTAAATATCTGTTTAATGAGGCTGACGATGGTTGCAGAAACACTGCAGTGTTGATTTGCTGTGGATTTGTGTGGCGTCAGCGAGTGAAAGCTTCATTGATCGCCCACACCACCTTTTGGTTTAATTATATCTCAATCAATGAAGCATACCTCCTGTTTTAACCCCGCTGTGAGCAAAAACACGGCCTGTGATTCTAGTATTTTATCATGGTAGTGCACAGATGGCTAATAAAAAGATAACAAGAGGCAGAAAGTTTCAACAGCAAGCGCTCCTGGTTACTGTGGCCATTTTTCCACCAGGCCTGCAGTTGAAACCAAATTAAGCCTTTTGATAGATAAATACCGGCTGTGTTTTACTCTTGAAAAGTAATCACCTGCGGCCTACAGCACATATTAGAGGGGCAAACTTGCGTCTGTTCAGTGATACCACCTGTTCCTGCCAAACACTAGAAACACATCAGAAAACTGGAAAGGAGGCACTCTGATGTTGAGAGGATATTAATGCTAATACATTAATAAAGCAAAGAAAAGGTCTCTGGCTCTCAGGGAATTTAAGTGCAGCAACGGCAGGAGGAAATGATGTAAGACTTTTATTAAAAGCCCATGCAAAGACAGATGTCCAGATTCTTGAATGTGCTTAGTTCTGTGGTCAAATGACACCTCagctagggctgcaactaacaatTAGTTTAATAATCGATTATTATGTCGAATATTTtttcaatgaatcaatgaatcggataaaaaaaaaaaagaaaagcattcattAATAACCCTTTATTAAATAACAGAACTAACAAACGTTGTCCTTGCACATCTATGAGCTgttgtaatgataataataaaaataataatgataataatcaaataaaaaactaacttagtaattttttcctgttttcaatccaaatatctaaaaaaatcttaaatcaagatgcatactagacacatgaaatagcataagaaattatgtcttgttttttgaaaaaaaaaaatctcaattttgtgattgtttgcttaaaacaagcaaaattatttgccgatggggtaagaaaaataatcttaatgagatataatctcaaacagaagtaATAAGCATCACTTAATTTTCTCATCCATTTGTTCTTGCCtagtcttgatttaagattttttaggtatttggacttgaaacaagatgaaagaaataagaaaaggttttatttatttatttatatttttattttattttatttttttttgcagggtAGCTTTATGACAACAGATTTAAAAATTAATGATCCAAAAAAGGCGAGTGTCTAAAAATTCTTTAGTCTTGCAAtgcaaagtgcaaagtaactATAGCAGCGCTGCTTTACTTCTTTTATTCACTCTGTCACTGGTGAGGCCCCGGAAGTATGTTTTGCTAGGCgatcattattttaaagcattcaCCTTTAATGTTTTTGTGTCAACATGTCATGTTTGTCAGCCACTGCAGCCACAAAATCGCTGTATGACAGATGTAACACAGATATgtgagtgtttgtttgttgtttaaaagATGTATAAATGATCTTGATTGTGTTATATAACTTGAGATGGGTATCAGCATGTTTATTTGTGGCCGCACACATGCCTCATTCACAAAAGCAAAACAGGATTCAGCACATAATTTCCTCAGTTACTCCCAAAATGCATGCAAGCATGTGGCTGGCCAGTTGGGAGAAGAATAGATTGAACTTTATTGTTACTTTACTACGTGTTTCTGAAATGAATAATACACATCGGCAAGATTTGAAAGGACTGTTAGACTTTCATAGACTTtcttgtgttttacaaactctaaatgtattgttttactagtatgtgtgtgcatttacatgtctaaaacataaaataagcagtgggtggttaaaaacactgcataattgtgataattgCCAACGCTCAGTTTGAATTTTTCACGTCATGCTTTTCAAGCTGGATAACAAGTAAACACCAGCACCAGGGACATTACGTTTCTCACTTCAAAATggaacaaaagtaggattctgtAGTGATTACCCTGCTTTTGCACCCTTCCTCCTCTTCAAAGACTCCAACATGTTTGCATTCCAGGTGCTGAATCATTGCCGTGGTGCTCCTGTGATCACTTTTGCATACTTGGctgttaacagattttttttgtttatttagtgtgAAATGCTCTTACACCTTGAATGACTAGGGTCACACAGATTTCTCTGCCTTCGCCATGTATCTTTCCTCTAATGTTACCtccactcgttttttttttttgctccgttcTGTCTATGAGGCGAGagaggcagtttttttttaaatgatcaaatgtCTCCACGTCACGTGACATGAAGAATTGATTATGAAATTTGTTGCCAATGCTATAAGTAATCAATTTTAATTGATATAATCAATTCGTTGTTGCAGTCCTAACCTCAACAAATACTATTAATATCATAAATTTGAATACTTAATAACAACTTTcatcctaaagggatagttcacccaaaaataaaaattctgttattaattacttaccatcatcaaagagcttagaatgaccaagaggcgacgctctggtgtaatttgggaaacagacactagagggcgcggcggccattttggaatgaaaactccaatagaacagcatgcatattataagtctgtaaaataaactattaaaagtgctgatgttcGTGATAATAcgtttcaggttgtatctcaactttaatgcgctttttgaataaataaataaaaaacaaagcagctgcttgccatcgcgacagtaatgagatccaatggacggccgatcactttcactccaaaatggcggaatccggggctgttgctgggcacagctgttgcaatggaacgttctattaagtgtcgcctcttggtcattctaagctctttgccatCATGTGGTTCCAAACCCAGAGACAGTTGTTATTCTTCAAAATACAACTGACATTTTTAGTTCACTTAAAAAACCTACTCTGTACCATCACGtcgttccaaacctttgagtttatttcttctgttgaacacagaataaaatatttagaaaaaagctgaaaatctgtaactattgacttccatcgtAGAAgaaacaaatactgtagaagtcaatagttacaagttTCCAGACTTCTTCAAGGCAGAAACTTTCATGGTTAccagaagaaagacactcaaaGGTTAGAGACaggtaaagtgtgagtaaatgaacaaAGAATTGATTAAACTTGAAATGAACTATAActtaaagatattttagattaaatccaaGAACTCCTTCATTCCCCATGGACAGCAATTATAACAGCTTAGTCACAACAGACtgtatgccttcagtggttcaatcttAATATTTTGAGAATActtgtgtgcacataaaacaagAATGACAGATTCACTGATAACAGTGCTGTGCTTTTTGTGTGCATCGCACTCGGTCACCTGCTGATGTTTAACAATGCTTTGTTTCATAGCTTGATAATACTCCGATTAAACCACCAAAGTCACATGGACTGTTTTGGTAGTTTTCTTTACATTGAACAAGCCGAGGGCATTGGTGTCTATTAAGGATAAGACTCtcatatttaatcaaaaatatcttaatttgtgatTTGAAGATGGACGGAGGTCTCAGGGGTCTAGTCTCGTGACAGTGAGTAATTAAt

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0005575 cellular_component cellular_component
GO:0016836 hydro-lyase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-123 Predicted to enable hydro-lyase activity. Acts upstream of or within swimming behavior. Is expressed in several structures, including cardiovascular system; eye; gill; integument; and pleuroperitoneal region. Orthologous to human CA10 (carbonic anhydrase 10).

Ensembl:

ensembl_id ENSDART00000178562

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010922 lncRNA upstream 191330 20806915 ~ 21106987 (+) False XLOC_004689
TCONS_00009291 lncRNA upstream 411835 20806897 ~ 20886482 (+) False XLOC_004689
TCONS_00010923 lncRNA upstream 411835 20807009 ~ 20886482 (+) True XLOC_004689
TCONS_00010921 lncRNA upstream 534144 20721097 ~ 20764173 (+) True XLOC_004688
TCONS_00009278 lncRNA upstream 677217 20620199 ~ 20621100 (+) True XLOC_004684
TCONS_00010924 lncRNA downstream 204180 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00010925 lncRNA downstream 237342 21790979 ~ 21799396 (+) False XLOC_004694
TCONS_00010926 lncRNA downstream 464309 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010734 lncRNA downstream 705325 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010927 lncRNA downstream 736343 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00009289 mRNA upstream 513168 20699534 ~ 20785149 (+) False XLOC_004688
TCONS_00009290 mRNA upstream 513354 20700961 ~ 20784963 (+) False XLOC_004688
TCONS_00009288 mRNA upstream 597445 20693866 ~ 20700872 (+) False XLOC_004688
TCONS_00009285 mRNA upstream 599134 20691310 ~ 20699183 (+) False XLOC_004688
TCONS_00009287 mRNA upstream 599135 20693743 ~ 20699182 (+) False XLOC_004688
TCONS_00009297 mRNA downstream 130602 21684239 ~ 21688087 (+) True XLOC_004692
TCONS_00009298 mRNA downstream 143903 21697540 ~ 21748008 (+) True XLOC_004693
TCONS_00009300 mRNA downstream 705325 22258962 ~ 22304841 (+) False XLOC_004696
TCONS_00009301 mRNA downstream 850471 22404108 ~ 22445061 (+) False XLOC_004697
TCONS_00009302 mRNA downstream 854215 22407852 ~ 22444387 (+) False XLOC_004697
TCONS_00009286 other upstream 606304 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009270 other upstream 799237 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009249 other upstream 1393902 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 1401390 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 1910044 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009299 other downstream 240365 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 889992 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 1024767 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009313 other downstream 1104286 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 1124316 22677953 ~ 22745783 (+) False XLOC_004704

Expression Profile

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