RNA id: AMCG00012440


Basic Information

Item Value
RNA id AMCG00012440
length 2504
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00012440
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18229745 ~ 18237188 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttcttttaatttcctttttttttgggggggggagaaagTTTTTTGAGGGGGGCAGCCGCTGATCTGTGTGTTTGCGAGCCATGGAGATGAAGAAGAGGATCAGTTTGGAACTGAGGAACCGGACTCCCGATAAGgtGGCGGAGCTGGTGATGGACAACTGCCGCACCAGCGACGGCGAGGTGGAGGGGCTGACGGACGACTTTAAGGAGCTGGAGTTCCTCAGCATGGTCAACGTGGGGCTGACCTCGCTGGCCAAGCTGCCCGCTCTGCCCAAGCTGCGCAAGTGCCCCAACCTCACGTACCTGAACCTGAGCGGCAACAAGATCAAGGACCTGGGCACTGTGGAGTCGCTGCAAAACCTGAAGAGTCTGCGCAGCCTGGACCTGTTCAACTGCGAGATCACAACCCTAGAGGACTACCGGGAGAGTGTCTTCGAGCTGCTGCCCCAGATCACCTACCTGGACGGCTTCGACCAGGAGGACAACGAGGCACCCGACTCCAAGGCCGAGGGGGACGAGGATGATGAAGATGACGATGATGACGACGATGACGACGAAGGGGCCGGCCCCACAGGGGAGTACGAGGAAGAGGAAGACGAGGACGAGGGCTCAGAAGGGGCCGAGGAGGAGGTGGGGCTGTCCTACCTGATGAAGGACGAGATCCAGGACGAAGAGGATGACGACGACTAcgtggaagaggaagaggaggaagtaGAAGACGatgaggaagaggagggggtgCAGGGGGAGAAGCGAAAGCGGGAGCCAGAAGACGAAGGAGAGGATGACGACGACGACGAAGACTAGTCCAGTGCAGACTCCCACCCCACCCAGCCCCCTGAGGTCCAGGATGTAAGCTGTAGAACaacaaggaagaaaaacaaaaaaaaccaaacaaaaaaaagtgtgatcttgcagattaattttctctttGTATACCATAGATATCACTGTAGAagctaaatgtttgtttttatatataaatatatatacaatacaagaaaaataagttttgaCGACAAATCATTTGTAATCATTccaagtttccttttttttttttcatttatttggttgtttatttccattgaagtaaagtgtgtgtgtgtgtgtgtaggggtgggggggttcaggcctgtgtttgtgtgggacAGCCGTCGGGAGTACATTGACTCCAGCCCAGATTCTGGTTGCGGAAAGAGCCAGGCTGATTGGACGTCCACCTTTACAGATTCGGCCTTGGCAGATTGATGGAAGATAATTGAAAACttaaagagggggaaaaagaacCGAAAACCAAGACATTGTCGTAGCCGTCAGTTTTGAATTTGTGGCGCTGGGAGTCGTCGTGATTTTCAGTCGGCCTGCTATCGCGGGTGCTGCGGTTTTGAGGTCACTGAGGTCCCAActgatgttttgtttggttCCGTATTTAGAGCTGTGCCTGAGCTGCTTAGACCGGCCCACGGCACTTTGAACGCACCCCCCCTTAATTTGGCAACTACAGTACTGTGGCAGTCTAGTCCCCATGTTCCTGTTCGGCTTGTTCGTGTACCAGTACCGTGGCTGACTTGTCGTTTGTATCCTCCCGCGTCTGAGTCCAAATTGTAAGTCTGGTTGAATTTCCAAAATCTCTTCCTGAAGGTTTTCTTTCATGGTTTGTTTCGGAGCGTGAGGAGTTGATGCACCCGTATCCAATGCGCCTCTTTAAAACCTCCTCCGCATGCTGAGGACTGAagcgctgtttttttttttgtttttttcctccccccaaTTCTAGGGgctctcaaactcaattcctggagagGTGTCGTCTcttctggtttgtgttccagctgGAACTCTTCCGTTATTAAATCACCCTGTTGTTTCCCGCAATTCGGCGTCTCAAACGTTTTTACAGTGGATTCCACATCACTGCCAATGACATCGCCAGTGGCCTGTAGAGGAGTATTCAATTGATCCGGTTAATCGAACCAATCGAGTAACGGGGGGCGGGGTTGGGAATTGAGCCGAGGAACAGTGGGTGGGGCCTCCACGATTTGATTGACACCCCAGAATTGACCAATTACATTTGTCATTCAGTGCTCGGGTGGAATAATAAGTCCAGGACAAGGATTTGAGCATCACTGTTCTCCATCAaagtttttttctgcttttctggaACCTGTTTATCTGGACACGAATTGCAgtggtttttttgttttgttttacagagtgagaacttttaatttgtatggCAATATGTATATAGTATCTGTTCCAACTTCTGGGGTTTGTCCTgtgtattttttgcttttaaacttggaattttcttttttaataaaagcacaGGTCAAGAGGTAAAGATTTAGACCCGTGACACTCGATgtctagtttatttttaagtcagtGGCTGTTGTaccagtttgtgtgtttggcgTTTGTGTGCTGTATACTGCTAAGAGggtttttaaatgagaaaaaaaatgctttaaaataaaataaggatttAATAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18648 ANP32E; acidic leucine-rich nuclear phosphoprotein 32 family member E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171869 lncRNA upstream 328089 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 565575 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 576283 17649265 ~ 17653462 (+) False G136569
TU171663 lncRNA upstream 580638 17648628 ~ 17649107 (+) True G136568
TU171659 lncRNA upstream 593784 17623113 ~ 17635961 (+) True G136564
TU172036 lncRNA downstream 24709 18261897 ~ 18269507 (+) True G136842
TU172043 lncRNA downstream 58027 18295215 ~ 18317076 (+) True G136848
TU172070 lncRNA downstream 196382 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 230618 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 236045 18473233 ~ 18474916 (+) True G136873
AMCG00012431 mRNA upstream 49928 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012432 mRNA upstream 60001 18162576 ~ 18169744 (+) True AMCG00012432
AMCG00012439 mRNA upstream 95524 18130284 ~ 18134221 (+) False AMCG00012439
AMCG00012429 mRNA upstream 222971 18002639 ~ 18006774 (+) True AMCG00012429
AMCG00012428 mRNA upstream 288183 17937937 ~ 17941562 (+) True AMCG00012428
AMCG00012447 mRNA downstream 92736 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012446 mRNA downstream 115823 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012454 mRNA downstream 152643 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012451 mRNA downstream 165117 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012452 mRNA downstream 179775 18416963 ~ 18442351 (+) True AMCG00012452
TU171980 other upstream 95364 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 325935 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 385824 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 434528 17792251 ~ 17795217 (+) False AMCG00012423
TU171771 other upstream 463254 17764145 ~ 17766491 (+) False G136641
TU172065 other downstream 148101 18385289 ~ 18388306 (+) True G136864
TU172158 other downstream 302357 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 932560 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 1000501 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1577737 19814925 ~ 19815617 (+) True G137252

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028340 False 2456 mRNA 0.43 7 NC_007130.7 42328423 ~ 42341815 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_01679643_01683542.mRNA True 2690 mRNA 0.45 8 CI01000054 1678970 ~ 1684623 (-)