RNA id: AMCG00012451



Basic Information


Item Value
RNA id AMCG00012451
length 3787
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00012451
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18402305 ~ 18414912 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGGGCTCGTCTAGCGTCAGCGGGTACAACGCTGTAGGAACCTCTCAGGCAGGCGGCGGGGACCCCTGGATGCTGGTTTCGGCGGTGACGGGGGGCAGCCATGGCGGACGACAGGCCTCGGTCGGTGAGCTCGAAGCGGGGCGCGCTGGCGGCGGGGGAGGGCGACACGGAGCCCAACATGCTGGTGCACAAACTCAAGAGCAGCATCTCgaaaAATATCCAGGCTAAAGTGGACTCCATCTTGCAAGACGTGCAGCGCTTCTCTGACAGCGATAAACTCTACCTGTACCTGCAGCTGCCCTCCGGCCCCAGCGCGGGGGAGAAGAGCAGTAGCGACTCCAGTTCCTTCAGCACAGCCGACCAACTGCACACCTGCAACTGGATCCGAAGCCACCTGGAGGAGCACGCCGACACCTGCCTGCCCAAACAGGACGTGTACGAGACCTACAGTGGGATCCGCAGGAAGACGGTGCTGAACATGCCTCTGCTTCCCAACCTGGACCTCAAGAACGACCCGTCGGAGCTGACGGAACTGGTGCAGACCTACAAGCAGGAGGTGACGGAGGCGGCCTGCGAGCTGATCTGCGACTGGGCCGAGAAGATCCTGAAGCGCTCCTTCGACACGGTGGTGGAGATCGCCCGCTTCCTGGTGCAGGAGCACATCGTGAACCCACGCTGCAGCCAGGCCGAGCTCATCACCTCCGCCGCACTGGCCGGCGGTCCTGCCAAGCCTCACAAGGGGGTGAAGAAGAGCCAGCCTCCCCCCAAGGGCAGTGGGCCAGAGGGCGAAGGCAACAGCCCAGAGACCAAGGATAAGGACAGCGGCGACCGGGCAGCGCCACCCAAGCAGTCCCCCGGCGAGAAGCCCGCGAAGGGCGTGGAAGGCGGCCGTCCGGGGGGGCGCGACTCCCAGGTGGAGGCGGTGATGAAGCGATTCCCCCAGCTGCTGCCACGCACCCCCGTCCCAGACAAGGTCCAGCTGCCAGCCCGCTCCTCACCCCCCGCGCTGGCGCCCAAGGAGAGGCCGGGCGTCAAGGTGACCCTGCCCATTGCCATGACCTCGCTGCCCCAGCCACAGGGGACGCCACTGCCCGTCATCAACATGATCCTGCCCACGGGCACAGTCAGCTTCCCGTATGCCGAGAAGGAGAGGGTGCCGGGCGTGGCTGCTGGGGCTGCACCGGGCCCCGTGCCCAGGCCCCGCCCCGCGGCCAAGCGGGCGCAAGACATGGTGGGCGAGGCAGGGTTGACGCCAACTAAGAGGAAGAGAGGGCGTCCCAGGAAGTCGCGGCCGGAGGAGACCGGGCCACTGCCACATGCCCAGCCCCCCGCCGCCACCACCGCCACCGGAGGGGTCATCCACAAGGCCCTGCCCTCCGTCCAGCCCTCTGTCACCACCATCTTGGAGGTCATGATCCAGGACCATGACGTGAGGGTGCTGGGTACTCTGCCACCCGGGCTGGATCCACAAGTCCAGCCGCTCCAGGACACGGTGGACCTCACTGTCCCGGAGGAGCCCAAGAGCCAAATCCTGCAGGTCTACCGGCCGGGGATGGACAGCCAGGGGCCCCTGATACTCCACACGGGGCCCGAGCTGGTGAGGGGAGACCCGGCCGAGCAGAGCCAGGGCTGGGAGGCCAGCAGGGCCATGGTGGAGGTGATCCGCAGGGTCCCGCAGTCCAGGGAGGCGAGCGCATGCCCTGAGGTGCAGGGTGAAGCATTTAGATTGAAGCAGGACTCCGGTAGTGGCGGCCCCTGCCTGGAGCTCAGCCTGAGCCCGGCCTCCCAGCCTCAGATAGTGGCCGTGGCACAGCAGCCCTCGCCCACCCCTCatgccagcagcagcagcagctagcCTCCTGGAGCCAGCCACGACCCCCGCCCGCCCCGGCCGGCTCAGCAGACACCAGACCCCTCTGCCTCAGCTGGGGGTGGAAGACGCCTACTGGAAAAGGGGTTCCAGGGAACTACAAGAAAGAATgcagaattattttgtattgattttattttctttctctttcttccccccTGCAGACACATCCAGGAAATGTGCAAGAATCAAATACTGGCACTTATTTTGAgagtattttactttttccttcAGGCCAAGACCCTGTTCTGTGTCCGTGTGAGtctctggtgtttttttttttgttgcttattATGACGgatatttaaatctgtttttaaaataacccATCTGGAGATGTGGGGATACAGTGTGTCTAACGCCTGGTGCTCCACAGGGTTCCAGATACAGGCCAGGCAGCAGAGAACCAACAATGTTTGGATCCAGAACCTGGTTTTCAGCACTTAAAGGACGTTAAGAGTATTGGACGGGTCAGACACCCTTGCAAGCTAAGCATTGGTGCTTCTTATTGCATCCCTCAGATGCACTTCCACACGTACGCCCAGCAGGGGCCACTCTAACCACTCATCCCTGCCAGTCTCTCGcactgcagtatatatatatatatatatatatatatatgttgggaCCTCTAAGGAACTGGAGTTTTTATCCAGCCCAGACATGagtaattaatgttaaaattaatttgcattgcattgtagaAAATTGTCAAATCCTTGTTTATCAAGTAGAATTGGTAACGGCgatcttttttttcagttttcagttttgttttgccagAGCATTTGATTAGTGtgacacattttctgttgcCTGTTCCACCACAATTGCCTCCGCTTTCCCCCTCCCAGAGTTCAGTGCTGGCTTCAATTGCCATGGCTCTGACAGTCGCCCAAAACAGGTCTTGAAGGGACCATTCTTTGACAGCGGCCCAGAGTCACAATAATTCtgagattatttgtttttgtttttgtcctgaTGCTTGTGCTTCTTTCTGACGCAGTCCTAAGGGCTGGCAAAGCTGAAAAGAAAATCCCCAACAGCGGTACAACACTTGAGATGTGAAGTCGAACACCCTAAAGCAATTTTTGGATCTGCAGCAATACTGCCAGTGAGCTGAGATCCCATCCACTCTGCCCTCTTCTGGAGCGATTTGGTTTTTggtgcaaaagaaaacaaaaaggacagATGTTCTCCCGGTTTTTACAGTCATTCCTGCTTCCCGATTCACGGTTTTCGACCAGGTATCACCTTTTCACATGCTTATATGAAGTTCTGACTTCAAAGTACAGCAAcagtacggtggccctgaagtgcaaaacacaacaacaaaaagaaaaacaaaaaaataaaacaagacaaaaacataaagATTTTTTACGGAATTGCGACATCTACAGtcctgcctttttgtttttgtgtttgtccttttgtttttgtttttttttgcattttccctTTTGCAATTGcggttttctttttgctgttgTGGTTTGCACATCCGGGCCACCATACGAAAGTCGAAGAATGAAGAGTCGAtcggattttgtttttgcatcgAATTTGTCAATAGTTCCCCCCTCCCCTGCCGTtttggcaataaaataaatgtgtgtcttGCACTTTATGTTTACCAGAAGATTTAATCTTACTTTTTGTACTGGtgtgcacattaaaaaataaataaaaaatgcttgatttaaaaacaaatgttaaatagCACCTTAAATGTTAGTCATTTTCAAGGTTCGACTCTGAATGTGCTAATGATGTTTTGAgctgttctgtattttttattcctcCTCAGTTTGTACATGGCCATGTTATCGAAtcttccttttaaataaatctatagCACTGAGGAATGTGGATATATTTTCATAACCCGCCctaaataaatgttgtgtatttaaG

Function


GO: NA

KEGG:

id description
K08061 RFX5; regulatory factor X 5

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU172043 lncRNA upstream 85229 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 132798 18261897 ~ 18269507 (+) True G136842
TU171869 lncRNA upstream 500649 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 738135 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 748843 17649265 ~ 17653462 (+) False G136569
TU172070 lncRNA downstream 18658 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA downstream 52894 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 58321 18473233 ~ 18474916 (+) True G136873
TU172188 lncRNA downstream 200986 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 200986 18615898 ~ 18637938 (+) False G136969
AMCG00012454 mRNA upstream 628 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012446 mRNA upstream 26312 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012447 mRNA upstream 51404 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012440 mRNA upstream 165117 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012431 mRNA upstream 222488 18174010 ~ 18179817 (+) True AMCG00012431
AMCG00012452 mRNA downstream 2051 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012453 mRNA downstream 30199 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012457 mRNA downstream 61799 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012456 mRNA downstream 78672 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012460 mRNA downstream 126505 18541417 ~ 18543186 (+) False AMCG00012460
TU172065 other upstream 13999 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 267924 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 498495 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 558384 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 607088 17792251 ~ 17795217 (+) False AMCG00012423
TU172158 other downstream 124633 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 754836 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 822777 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1400013 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1476255 19891167 ~ 19895599 (+) False G137265

Expression Profile