RNA id: AMCG00012452


Basic Information

Item Value
RNA id AMCG00012452
length 4592
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00012452
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18416963 ~ 18442351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCAGTAACAATATCTTGCGATGGTAGCGTTTCCTGTCCGGTGCGTTAAGGAATCGCGGGGGTAGCTGTGAAACGAGCTCCATTTTGGCTCCAGACGGGAAACGGCGCGGCGTGCTCCAGGGCGGAAACGCAGAGCCAACATGGCGGAAACGGTGCTGTAGTTTCGCAAGCGGCCCCCTGCTTTAGCGATGTTTTCCTTAAGGACCCACAGGCGCTAGCGAAGGCCGGACCCAGGCCTGTCAATTCTCCCTAAGTTGCAAGAGAGAAACTCGGGAGGCGAGTAGAGGGGGGATCGCAGCCCTTCCCAAATGGAGCCCAAAACCTGGAGATAGAAGCgaattaatttctttgttttacactCAACGCGGATATCTGAGAGtggcCTGTTTGTGTGATTCGCCATGGGTGACGCGGACGTGGAACTCTCCCCTTCCCAGATGGACCAATCGCAGCAGAGTCCTCCTTCCTCCCCCTCGTCCGGCCCATCGTCCTCCTCCGACAGCAGCCACGCCATGAGCATtggcagcagcaccagcagcggcagcagcagcagcagcagcgccggcagcagcagcagcaccagcggCGAGAGCCCGCGCGGGGGCAGCCCTCCCCTGGACGTCATCTCCGAGGGCGTGGCCGAGCTCACCCTGGTCATCGACCCCGAGGTGGCCAAGAAGGCCTGCCAGGAAGTGCTGCAGAAGGTCAAGCTGATGCATGGGGCGGggggtgaggaagaggaggatgaggaaggCGGAGAGGGGCACCGGCTGGTGAACGGGACGGCCTCGGAGGGCGAGGCGGTGGGGAAGCCGCCGAAAAtccaggaggaagaggaggagccgCAGCCCGCAACGGTGAAGAGCGCCCGGCGGAGGCAGAAGAATAACTCCGCCAAGCAGTCGTGGCTCCTCCGGCTGTTTGAGTCCAAGCTCTTCGATATCTCCATGGCCATCTCCTACTTGTACAACTCCAAGGAGCCCGGTGTCCAGGCCTACATCGGCAACCGTCTCTTCAGCTTCCGCAACGAGGAAGTGGACTTCTACCTGCCCCAGCTGCTCAACATGTACATCCACATGGACGAGGACGTGGGCGACGCCATCAAGCCCTACGTGGTCCACCGCTGCCGCCAGAGCATCAACTTCTCCCTTCGCTGCGCCTGGCTGCTGGGCGCCTACTCCTCCGACATGCACATCTCCACGCAGCGCCACTCGCGGGGCACCAAGCTGCGCAAGGTCATCCTCTCCGACGAGCTGAAGCCTGCCCAGCGTCGCCGCGAGCCGCCCCCCGCCGCCGCATCTTGCATGGCCGCCCACCCACCCGGCGTCTCTCCGCTGTCCTCCGAGCCCTGCCTTTCACCCTCCAAGCGCACCCACCAGCGCTCCAAGTCGGACGCCACCGTCAGTGTCAGCCTCAGCAGCAACCTCAAGAGGACGGCCAGCAACCCCAAGGTGGAGAGCAACCAGGACGAGGGTCTGGCCTCCAGCACTGAGAGTATTGATTCAGAGACGGGTAAACCCGTACGCCTGACGCCCCAGCGGGAGTTCATTAAGTCCCTGATGGGCATCGGCAAGCGTCTGGCCACCCTGCCCACCAAGGAGCAGAAGACCCAGCGACTGATCTCCGAGCTGTCGTTGCTCAACCACAAGCTGCCCGCCCGGGTCTGGCTGCCCACCGCCGCCTTCGACCACCACGTGGTGCGGGTTCCTCACACGCAGGCCGTGGTGCTCAACTCCAAGGACAAGGTGCGGGGCTGGGGTGTGGAGCGGGATGGGGCCCCCTACCTGATCTACGCCGAGGTGCTGGAGTGCGAGAACTTCGAGACGTCCAGCATTCCGGCCCGCATCCCCGAGACGCGCATCCGCAGCACGCGCTCCGTGGAGAACCTGCCGGACTGCGGCATCACCCACGAGCAGCGCGCCAGCAGCTTCAGCACGGTGCCCAACTACGACAACGACGACGAGGCCTGGTCCGTGGACGACATCGGAGAGCTGCAGGTGGAGTTCTCCGTGGACAGCATCACCAGCCAGGAGAGCAAGGAGCCTGTCTTCATCGCTGCCGGAGACATCCGGCGGCGTCTCTCGGAGCAGCTGGCACACACGCCCACCACCTTCAGGAGGGACCCGGAGGACCCGTCGGCCGTGGCCCTTAAGGAGCCCTGGCAGGAGAAAGTGAGGCGGATCCGAGAGGCCTCCCCCTACGGCCACCTGCCCAACTGGCGCCTGCTGTCCGTCATCGTCAAGTGTGGGGACGACCTGCGCCAGGAACTGCTGGCCTTCCAAGTGCTCAAGCAGCTGCTGGCGATCTGGGAGCAGGAGCGCGTGCCGCTGTGGATCAAGCCCTACAAGATCCTGGTGATCTCGTCGGACAGCGGCATGATCGAGCCGGTGGTGAACGCCGTGTCCATCCACCAGGTGAAGAAGCAGTCCCAGCTGTCCCTGCTCGACTACTTCCTGCAGGAGCACGGCAACTACACCACCGAGGCCTTCCTGACGGCACAGAGGAACTTCGTGCAGAGCTGCGCCGGCTACTGCCTCATCTGCTACCTGCTGCAGGTCAAGGACAGaCACAACGGCAACATCCTGCTGGACTCTGAAGGCCACATCATCCACATCGACTTCGGCTTCATCCTGTCCAGCTCTCCGCGCAACCTGGGCTTCGAGACGTCCGCCTTCAAACTCACCGCCGAGTTCGTGGATgtgATGGGAGGCCTGGACGGAGACATGTTCAACTATTACAAGATGCTGATGCTGCAGGGCCTGATCGCCGCCCGCAAGCACATGGAGAAAGTGGTCCAGATCGTGGAGATCATGCAGCAAGgCTCCCAGCTGCCCTGCTTCCACGGCTCCAGCACCATCCGCAACCTGAAGGAGCGCTTCCACATGAACCTGACAGAGGAGCAGCTGCAGGTGCTGGTGGAGCAGATGGTGGACGGCTCCATGCGCTCCATCACCACCAAGCTGTACGACGGCTTCCAGTACCTCACCAACGGCATCATGTGATCCCCCTCTCCGcctctccctccgtctctcgcgctctctctctctctacggACGTACCACGGACGGAGCACGGGGGCCCCGCCGAGCACGTCCCCACGCCCCCCCCTGTCCCTCATCACCGCCAGCCGGTTCGTTCGGCGCGTCAGTTAGGCCCCGGTGGACGGTGGAAGCAGGGCATGGTGGGTATTTCCCTCCTCTTTCCGGTCTGTTCCGTCCCGGTCCCCCCCACCGCTGCCCGAAGCTGTAGATCTCACTGCTGCCCAAAGCCATAGAGTCGCTCTGTCCCTAGACCGGTTAGGTGGAGGATCATGAGATAGGCAATACCTCCCAGTCCAAGCCAGCGCTGTCCCCCTCGAATCGGCGGCCTGTCCGAGGCCCCAGCTCTGAAGGAGGCCGTTCCTGAGCTCCTCCCGGGGTCCCGGGCTGGAACTCGACGTCTCTCAGTTCAGCGCCAGGAACGGTGCCGGTTCTGATCCGAGCGGCCGTTTCGATGGATAAGTACACGATACAGATTCCGTCTTCCCAAAGTCTTTTTTTTGATGTACAAACCCAGCCAGATTGGAAAGCAAACGGTcaaaaatcaaaagtaaatcGATTTCGGGTTGCTGGGATCGCCGGTTCGGACCTGAGCCTCGGCCGGGGCGGCACCGGTTTGCGCGGCAGACAGTCATATCTAGTAGTGTCGGGCTGGCGGTGACTGGCACTGTGGGGGTGGCCGTGTGATTCCCTCCTCCCTCGTCTCCCATCCCCCTTTCCCACCAACACCCCTGTGGTATGTTTACAGCTTCAAGGACAGCGCCCCCTGTCTCCAGGTCTTAATGGCCACAGCCCCCTCTTCCCCAGGACACACATAGATGGAACATGCAAGGACTTTTTAGATGCTTTTAGGAATTTTGAATGGGATGTTCTTGTACagatctatatctatctatatagatTACACTTCCCCGTTCTTGTAAGCCACTAAATAATAACCGACAACCGCAACGAAGACCACCACAGAGGAGTACAAACTAAACTGAGAGCCGTGGAGCTCTTTGGACCGATCGCCCCGCCCCGGTCACTTGAGATCCTCCTTCAGGACTAAAGAGAAGCTTCTTCCCATACTTGAAGAAAAAGGAGTGGCTGGGGTTTGGTGGGGTGGAAAACGGAACAAAGAGACGAGGAGAAAATGGAAACCAGGACTCGAAATGTTGGTATCTTTCACTACGGACACGTTGTGCTCTGGGACGGACTACTGTTGGGCCCCCCATCGCTGTTTCGGAGGTGACAGCGTTTGTTTTCGGAACAAATCCCAGCTGTAGTggtcttccctctctctctctcTCCCAGCCCCCCCCCTTGGATTTTACTTCCACGCCTCTCCGACTACAGCCGAAGAGTTAGAAGAGTCCGATCCGTTGCTCCCTGTCCTCCCTCGAAAGCACAGGGAGCGTGGGGAGGAGGACAGGGAGCCTCCCGGTTGACATTgcgttttctttgttttgtttagtttttttttttaataaaatctccTCTCCCCGCCCCTTTTACATAATTTCCTCTTCCTGTCCCGccttcacaatttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG:

id description
K19801 PI4KB; phosphatidylinositol 4-kinase B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172043 lncRNA upstream 99887 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 147456 18261897 ~ 18269507 (+) True G136842
TU171869 lncRNA upstream 515307 17900908 ~ 17901656 (+) True G136718
TU171670 lncRNA upstream 752793 17663433 ~ 17664170 (+) True G136571
TU171665 lncRNA upstream 763501 17649265 ~ 17653462 (+) False G136569
TU172069 lncRNA downstream 25455 18467806 ~ 18470784 (+) True G136866
TU172078 lncRNA downstream 30882 18473233 ~ 18474916 (+) True G136873
TU172188 lncRNA downstream 173547 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 173547 18615898 ~ 18637938 (+) False G136969
TU172232 lncRNA downstream 460161 18902512 ~ 18902871 (+) True G137007
AMCG00012451 mRNA upstream 2051 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012454 mRNA upstream 15286 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012446 mRNA upstream 40970 18353011 ~ 18375993 (+) True AMCG00012446
AMCG00012447 mRNA upstream 66062 18329924 ~ 18350901 (+) True AMCG00012447
AMCG00012440 mRNA upstream 179775 18229745 ~ 18237188 (+) True AMCG00012440
AMCG00012453 mRNA downstream 2760 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012457 mRNA downstream 34360 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012456 mRNA downstream 51233 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012460 mRNA downstream 99066 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012458 mRNA downstream 103227 18545578 ~ 18552814 (+) True AMCG00012458
TU172065 other upstream 28657 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 282582 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 513153 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 573042 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 621746 17792251 ~ 17795217 (+) False AMCG00012423
TU172158 other downstream 97194 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 727397 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 795338 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1372574 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1448816 19891167 ~ 19895599 (+) False G137265

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020091 False 4940 mRNA 0.45 10 NC_007127.7 38167193 ~ 38200523 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_02374077_02383616.mRNA True 2722 mRNA 0.47 11 CI01000016 2373943 ~ 2384488 (+)