RNA id: AMCG00012456


Basic Information

Item Value
RNA id AMCG00012456
length 1576
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00012456
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18493584 ~ 18512606 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacacacacacacacaggtaacGCATACAGACACTCCACCGCCACAGACAGGCACTGCATCAAAGAAGACTCAAAAGCATCtcgcctttttttattttattttatttgccccTGCATTGTATCTCTCTATGTATCTCTCTACCCTGTACACAAGCTGATCGAATCCACAGGTCCGGAGGCAATGGGGACGTATGCAGATCGGAAGGGACAGCAAGTGCCCAATGGGGTCCAGGATCCGTCGAAAGTCGCCCCCAACATCCAGGACATGGAGCTGAGGGAGGAGTGGCAGGACGAGGAGTTCCCCGGGCCCCTTCCAGAAGACGCGCAGAGCCCAGGCGATGAACCGGAGAGCCCCTCTGAAGCACAGGGCAGGCCAGCACCGCCCAGCAGCCTGGCCCTGTCGGGGGACCGGCAGCGGAAGAAGAGGCTGGTGGCGCCCACCCTCAGCCTGACGCTGGACCGCACCAGCTCGGTGATGTCGGACGACTTCGGCGCGGCCGCCCTCTCCCCGTCTCCGGACGACGATTTCGACATCAACCTGGAAGACCTGGACACGCCCTCGGACAGCGAGTCCTGGACGTTCCCCGAGAGCACGCATGACCTGGAGTGGGAGGACGACCTGCCGCGGATGGGCCGGGAACGAGGCGCGCGGGGAGCGAAGGCGATGGGGGCGGAGGGTGGGGCGGGGGCCAGCACCCCCGTGATGGAGCACGCCGAGACGGGACACCTGGACGTGGACGAGGTGGATAGCCAAGGCCGGAAGTGGCGTCTCTTCCACATTGCCGGTCAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCCTACCTGAGGGTGCTGTCCCACGGGGGCTACTACGACGACGGCCTGAACGCCATCATCGTCTTTTCCTCCTGCTACCTCCCGGAGAACAGCATCGAAGACTACGAATACGTCATGGACAACCTGTTCAGGTACATCATCGGGACGTTGGATTTGATGGTCTCGGAGAACTACATCATCGTGTACCTGAACGGGATGTCCCCTCGGAATAAAATGCCCAGCATCAAATGGCTGAGGCAGTGCTACCTGACTATAGACCGGCGGTTACGAAAAAACCTGAAAGGCCTTCTTGTTGTGCATCCATCCTGGTACATCAAAGCCCTGATCACCATCATTAAACCATTTATCAGCGTCAAGTTCAGCCGGAAGCTGCGGTTCATGAACAGCCTGAGGGAACTGGGCGAATTCATCCCCATGGAGCACGTGCAGGTCCCCGACTGCATCCGACAAATGGATGAGGAAATGCACAAATCCAGGCCTGTCTCGCATTGAGGGGCGCTGCGAGCCGGGAAGGGCCCACACTGCCGTGTATATAGTGGTGTACATAGAGACGATGGGTATGGGTTGGCCACATCAGTTGGTGACATCAGAGCTGCTTCTGTGACACAGTGGGGGGCGTGGCCGGGGGCAGATCCTTATGTGCCACCAGAGTTTCCTGCTGGAGAATTAGTCATTATTAAGCTGTACCAGGCTTGACTGTTACCCTTCTTGCTCTTATAAAGAGTGTGGTGGGATTTccagtgtgtggg

Function

GO: NA

KEGG:

id description
K18448 BNIP2; BCL2/adenovirus E1B 19 kDa protein-interacting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172078 lncRNA upstream 18668 18473233 ~ 18474916 (+) True G136873
TU172070 lncRNA upstream 22800 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA upstream 22800 18467806 ~ 18470784 (+) True G136866
TU172043 lncRNA upstream 176508 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 224077 18261897 ~ 18269507 (+) True G136842
TU172188 lncRNA downstream 103292 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 103292 18615898 ~ 18637938 (+) False G136969
TU172232 lncRNA downstream 389906 18902512 ~ 18902871 (+) True G137007
TU172242 lncRNA downstream 419818 18932424 ~ 18933248 (+) True G137016
TU172261 lncRNA downstream 451928 18964534 ~ 18972066 (+) True G137031
AMCG00012457 mRNA upstream 2113 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012453 mRNA upstream 26999 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012452 mRNA upstream 51233 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012451 mRNA upstream 78672 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012454 mRNA upstream 91907 18389831 ~ 18401677 (+) True AMCG00012454
AMCG00012460 mRNA downstream 28811 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012458 mRNA downstream 32972 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012466 mRNA downstream 383808 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012464 mRNA downstream 402612 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012465 mRNA downstream 420978 18933584 ~ 18937478 (+) True AMCG00012465
TU172065 other upstream 105278 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 359203 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 589774 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 649663 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 698367 17792251 ~ 17795217 (+) False AMCG00012423
TU172158 other downstream 26939 18539545 ~ 18544490 (+) True AMCG00012460
TU172324 other downstream 657142 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 725083 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1302319 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1378561 19891167 ~ 19895599 (+) False G137265

Expression Profile