RNA id: AMCG00012458


Basic Information

Item Value
RNA id AMCG00012458
length 1512
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00012458
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18545578 ~ 18552814 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacaaacacaataataaataaatatatatattttttcccccccaaaaagtTATAACACAACAACGGACCGAAAGCTCTCTCCGGGTGGGACAGGACCCCGACACGTACCGGCCTCTCCTCCGCCGAGCCGCCGCGATGTCCTTGGTGGATTTAGGAAAGCGTTTGTTAGAAGCAGCTCGGAAAGGCCAGGATGATGAAGTCCGCTCTCTCATGGCCAACGGAGCTCCCTTCACGACAGACTGGCTTGGCACGTCGCCCCTCCACCTGGCCGCCCAGTACGGACACTACTCCACAGCCGAGGTACTGCTCAGGGCAGGCGTCAGCAGGGACGCCAGAACCAAAGTGGACAGGACCCCTCTGCACATGGCCGCCGCGGAGGGCCATTCTGTCATCGTGGAGCTGCTGGTCAGGAGCGGCGCCGACATCAACGCCAAAGACATGCTGAAGATGACCGCGCTGCACTGGGCGGCCGAGCACGGGCACCGTGAGGTGGCGGAGCTGCTGGTGAAGTACGGTGCCGACGTCCACGCGCTCAGCAAGTTCGACAAGACGCCCTTCGACATCGCCGTGGACAAGCACAGCACCGAGCTCATGGTCTTATTGCAGGAAGGAATGCAGAACCAGGTGAACGTGAACCCCGAACGGTCCTTGCCGGTCAGCACTCCGATGACCATCTCCGCCCCCCAGTTCATCTTCTCCTCAGGAGGGGTGGTCAACCTCTCTGACCTCGtttccaccaccaccaccaagaCTACCTCAGgGGAATCTGTCTCCACCACCTCAGTCCTGGCGACGCTGGCGGCCCTGGCAGAAGCCTCCGGGCCCATGTCCAACTCCAACCGCACAGGTGAGTCCGAGGAGGTGATCGCTGCCGACTCCGTGGATTCGGCCATTCAGCACATGGTGGGCAGCGGAGGTCAGAGGGTCATCACAATAGTGACAGACCAGCACGGCAACTTGCAGACCAGCGGGCTTGGGCAGCAGTTCATCATCACTGAAGAAGTGGTGGAAGAGGAGCCCCAGCCCCCCCCAGTCAGGAAGAGAAAACTGGAGGCAATGATCAATCACTCTGAGGTCAACGAGAAGgagCAGACAGAGCTGCAGAAGGACACTGTGGAGAGGGAGCTCCTCCAGAAACAGCTGCAGGAGGCCAACCGCAAGGCCCAGGAGTACCGGCAGCAGCTCCTGCGCAAGGAACAGGAGGCCGAGCAGTACCGCCTCAAGCTGGAGGCCATGACCCACGTGCAGACCAACGGCGCCGTGGCCCCCGAGGAGGGGGAGCGGCTGCAGGAggaagtggaggaggaggaggtggcggaagaggaggaggcagaggaggaggtggggggggaggaggaggaggaggaggacgaggacggGGCCGGCCAGCAGGTGATGGTCCTGCCCGAGGGGGCCATCATCATCAAGGCCGAGGAGATGGACCCCACCGAGGAAGAGGAGGTCACGCTGGTGGAGACTGTGGAGACCACACATGCAGAGGTCACCTCCTAA

Function

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172078 lncRNA upstream 70662 18473233 ~ 18474916 (+) True G136873
TU172070 lncRNA upstream 74794 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA upstream 74794 18467806 ~ 18470784 (+) True G136866
TU172043 lncRNA upstream 228502 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 276071 18261897 ~ 18269507 (+) True G136842
TU172188 lncRNA downstream 63084 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 63084 18615898 ~ 18637938 (+) False G136969
TU172232 lncRNA downstream 349698 18902512 ~ 18902871 (+) True G137007
TU172242 lncRNA downstream 379610 18932424 ~ 18933248 (+) True G137016
TU172261 lncRNA downstream 411720 18964534 ~ 18972066 (+) True G137031
AMCG00012460 mRNA upstream 2392 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012456 mRNA upstream 32972 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012457 mRNA upstream 54107 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012453 mRNA upstream 78993 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012452 mRNA upstream 103227 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012466 mRNA downstream 343600 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012464 mRNA downstream 362404 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012465 mRNA downstream 380770 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012471 mRNA downstream 494683 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012470 mRNA downstream 501826 19054640 ~ 19065913 (+) True AMCG00012470
TU172158 other upstream 1088 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 157272 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 411197 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 641768 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 701657 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 616934 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 684875 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1262111 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1338353 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1778267 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU186858 False 972 TUCP 0.61 6 NC_053124.1 36338410 ~ 36348627 (+)