RNA id: AMCG00012459


Basic Information

Item Value
RNA id AMCG00012459
length 3766
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00012459
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18516836 ~ 18537125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATGGCCCAAGGGAGGCGCTCTTCAGAAGAAATGACtttgaaaaagcacaaaaaaaaaaaaaaagttctcgTTTCAAACCTAAGAATTTCCTGATTGAAAGCTGGGAACCACACCTCGGTGAGTCTGTACAGAGCTGCCGAGTCCGGATAGTACAGTCCTGCCTGAaaggaaaagggggaaaaaaggcttTTCAGAGGGAATCTGGCCTCTGGACTGAAGTCTGAGACAACCGAGGTCGGAACAGAGAACAGCGAAACCGCAAGCAGACGCACcgaaagagagtgagagtgaggaTCTGTCGGCAGCCAGGCGGAAGAGAGACGAGAGAGCATCCGAGGTTTTGGGATTACACCACTGGGAGGCAGAAGGGGGGGCTGAGGAAGGACTTGGATCACTTGGATGGAGTAGCCCCCTAGCAAGGACCCCAGAGGATTGGATTACTACAGATTGgaccctcccctcccccccccttttttttttctttttccccatcCTCCCCTTCCCACTCCCTCCTTTCCTCTTCCCTCCACCCACTGCCTCTGCCAGTTGAGAGCTGGGAAGAGGTGACTTCAAGGAACCgggatttattaatttattttgtgaatcatTGGTGGAGGACTCCAAACATGAGCGAGTTCTGGCACAAGATCGGATGCTGTGTGGCGGAGAAACCCCAGCCGaagaagaagaggaggaagatcGACCGCAGCATGATTGGGGAGCCCATGAACTTCGTCCACTTGACGCACATCGGCTCCGGGGAGATGAACGAGGGGCTGCAGCCGTCGGGAACAGTCCAGGAACAAATGAGGTCCAAAGGTCCCAGTGTCAACGGGCGCAGCAGGAGGACAACATGGGAATCCACTATTAAGTACCCCCTTAAATTTGGACAGGACTATATCCCTTACCGTGAACTAGACCCCCAACCTTCTGGACAAAACCTCCATCACTTCCGATCCTACACAGGAGGACTTCCCCGCTGGACGCCCATCGTTTTGCCTCACCACCACCCTGCCCCCCGATCCGTAAGCCCAAAAGAATGACATCTATGGAATCCAGGAagtacataaaacacacaaaccaaaaaaacaacctccTAGTCATTTCCGATGGAGAAAGAGACTTTGGGGTTTGGAAGCAGAGTATCGTTCCACTGGTCTGACCATGGAGACTGTGTATGCACATCATGGGGGGGGTTAAGCAGGGAAGAGAAGCGTGTCCATACACTGGGCTTTGTAACATGGGCCACTTTAATGTGTGTAGATCTCATTGTAGAACCTTTCAGGGCTCTTCTCAAAATGAACCTCCACCTTCTCCAGCTGCCAGCTTTGTGTGCACACTGCCAGACCAGCCAGAACAATTATGGACGGTCCCTTACTTATTCTTTGTCCCGAGTACATTATTAGGGGTGTGAGTGAGGGGAGGGGCTTCTTTTTGGACTTACTAAATGTAGCGTAGACTAGCAGAATGTGAcggttttgattttaatttaatttgcagccGCTGGGGCATCCGCTGGCTCGTGCTTGTGTACAGTTGAATCAaatctgatgtgtttttaaggatcattttacaaaatcttgtttttaattgtggtGGTTGGTCTTTTGATGTGGGGATGTGGATTTCATGGAGCGTTTCATTTCTGACCGGCCAAACCAGGGTGGGTCCATCGGCAGACGCTCATTCTGAGACCAAATGTTAGAGGGTCTGTTTCCAGAAAGCCAAGCCAACTAGTGCTGGGTGTTTTGTTGCAAAATTGCAAAATTGTTCGCCGCGCACTGGCTGAGCGAGAGCCAGTATAGAAGCTTTTGGCCATTTCCGGTCCCCAAAACATTTCGGATCAGTCTAGAACCGCTAGACGGACTCTGACCCTCTACAAATTGACGGAATTGTGGATTCATCCACAAAACCGGGGAACTATTTTCAAGACTGAGGGAGTGGCATTTTCGTATGCCATGATCGTTTTGCATTTCGTagcgtaaaaaaaaaaaaattgtgcgCCTGGTTTCACATCTACCCGCAGGTATACTTGTACTTGAACGACATTATGATGAAAGGCTAGTTTGAATTCTGCAACGGCATCCCCTCGTCAATTGTTATTTCCCAGATCTTTGGACAGGATCAGAAACTGCAATTTGTATCGCCATGAATGACATGAATGGatagtatttaaaacataacaaaggTGCAACCGACAGATATAGTGACAGcaagtgattttgtttgtttttaagaagtgTGAACCGTTGCTTAAGACATACAGGCACACAAACCTACACGTCTTGCAGAAAAGGGTTCTAAGCCACGCTCACTTCAAATCGCATCAACCGCAAAAATGTGCTAGGATTCTACCTCAGCATGcccagtttttaattaaaaataaacacattacaaatgaaGGTAGCAACCGTTTCAAGGGCTGGACAATTAACCATCACCACCAAAGCAACGTCACCAAAGAGTTCCACTTTCACCGGGTTGTGTAATTTTGATCCTCAACGGTCCGTACACACATTGGTCTGGTTGTACACTGGATCACCCACACTTTCGATACTTTCCATGATCCCCTTTACTGGACTATGTGACGCCTCCGAGGCTCGGTATTAACACGATGAACAGCCCTGCGTTTATATGACTGTTTTCTCCAGGTACCTCGAAAAGGAAATAGCCAGGAggggatctttttttttttgttgcaattTTGAACTTCTTGTTAagtgttctttgttttgttttgaattcttTGTTTCCCCCACCATGTGCGTAACCGTCTGCGCAAAATCCACAGGGTGTGAATCACAACTTGTCTCCCACGAATCACAGAGAGAGAATGCAACCCAAAATAATCCCCTTTAAAACATGTCAACTGTGAGATATACTTGCTAGCTTTTTCTTCCAAGAAGTGTGGCCACCTGTGAGACTTTGATTAGGACCATAACGCCGTGCCACCGAGAGATTTCTGTTCCAGTGTTTTATCAATCAATGAATCCACAAGGACCTAAAAGGCACTTCTAAGAAAGTGTCGAGGAATCATGTTCCACAGCCCCGACTCGAGTATTAACACTTCGCCAATTCAGTTTGTCTACTGATACCTGTAACTGCATTATCCAGAGGccaggtatttttattttaagctcCAGTTACCACCCCTCCCCAGAAAATTCCCAAAACCAGTGTTGGGTTTTCCACATATCTTTCTAAAGTGCTCAGCTGCACTCGGAAACCACATATCCTCTTTCAGTTTCAAACAAAAGGGCAGTTCTGTCTGTTCCggttctgtttatatatttcgGGAATatcaataatgacaataataaaagcCATTCACTGGATTAAATATGATTAACTGTattagcatttttaattattattttaaactgctctatgtgtctgtgttgcaagatttttttttttttttggtctttggTCTTTTGGGGTCTTTTCCATTCCCCTTCAGTGCACCtctggtttattattattgtcactaGTAATTGGTGTTTTCTTGATATTTATGTTGACTGAAAAATAACCGTGAGACTTTGCAAAGACCAGGAAAAAGCCAGcatgtttctatttgtatttttgttgtttccgCTTTGCCACTGAGGGAGGGGTCAGgttgtttcattttgtaatgatGGCTGGCGTGAATGAGGGTGCAAGACAAACGACCAAAAGAAACCTGTTGTTGAGTATTTGTGTGCTGACTTGTGGcccttctgtgttttgtttttttaaatacagttgatATTTTAAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172125 lncRNA downstream 22931 18420009 ~ 18493905 (-) True G136915
TU172112 lncRNA downstream 74249 18439579 ~ 18442587 (-) True G136906
TU172114 lncRNA downstream 74249 18439579 ~ 18442587 (-) False G136906
TU172012 lncRNA downstream 337149 18140751 ~ 18179687 (-) True G136826
TU172002 lncRNA downstream 403933 18112676 ~ 18112903 (-) True G136820
TU172164 lncRNA upstream 7849 18544918 ~ 18546313 (-) True G136951
TU172165 lncRNA upstream 7849 18544918 ~ 18545856 (-) False G136951
TU172169 lncRNA upstream 15938 18553007 ~ 18556113 (-) True G136955
TU172186 lncRNA upstream 76970 18614039 ~ 18614257 (-) True G136968
TU172222 lncRNA upstream 249887 18786956 ~ 18787155 (-) True G136997
AMCG00012455 mRNA downstream 40688 18469995 ~ 18476148 (-) True AMCG00012455
AMCG00012450 mRNA downstream 128607 18383678 ~ 18388229 (-) True AMCG00012450
AMCG00012449 mRNA downstream 189953 18323005 ~ 18326883 (-) True AMCG00012449
AMCG00012448 mRNA downstream 195863 18295215 ~ 18320973 (-) True AMCG00012448
AMCG00012441 mRNA downstream 239232 18261865 ~ 18277604 (-) True AMCG00012441
AMCG00012461 mRNA upstream 31780 18568849 ~ 18569085 (-) True AMCG00012461
AMCG00012463 mRNA upstream 58132 18595201 ~ 18601943 (-) True AMCG00012463
AMCG00012462 mRNA upstream 78844 18615913 ~ 18651892 (-) True AMCG00012462
AMCG00012467 mRNA upstream 392652 18929721 ~ 18933201 (-) False AMCG00012467
AMCG00012469 mRNA upstream 402903 18939972 ~ 18954308 (-) True AMCG00012469
TU172106 other downstream 138539 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 279580 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 416209 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 745870 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 755382 17759979 ~ 17761454 (-) False AMCG00012416
TU172290 other upstream 495534 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 904858 19441927 ~ 19507394 (-) True G137199
TU172548 other upstream 1177093 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 1207266 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 1367353 19904422 ~ 19910378 (-) False AMCG00012503

Expression Profile