RNA id: AMCG00012460


Basic Information

Item Value
RNA id AMCG00012460
length 348
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00012460
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18539545 ~ 18544490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGACACCCTCAACACCCAATACGACTCCTTCCTCTACTGGAGGCAGCCGATCCCAGAGCTGGACCTGGCCGAGCTAGAGGGCCTGGAATTGGTCAACGGGTCTTCGATCAAGGGCGGCAAGGGCgggaagaagaagagagacGGCCACAATGCGCAGGGTTGGGAGGAAGACAACACGGAGCTGTCGGAGTACAACACCTTCAACTACTGGAGGGAGCCCATCGCCAGCATCGACCTGCTAGACTTCGATCTGCTAATGCGCGACTCACAGACAAAACAATTGGATTTTTTCAACTCGCAGCTGGATTGCACAGATGAGTCTGTGCCACCCCAAGACAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172078 lncRNA upstream 66501 18473233 ~ 18474916 (+) True G136873
TU172070 lncRNA upstream 70633 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA upstream 70633 18467806 ~ 18470784 (+) True G136866
TU172043 lncRNA upstream 224341 18295215 ~ 18317076 (+) True G136848
TU172036 lncRNA upstream 271910 18261897 ~ 18269507 (+) True G136842
TU172188 lncRNA downstream 72712 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA downstream 72712 18615898 ~ 18637938 (+) False G136969
TU172232 lncRNA downstream 359326 18902512 ~ 18902871 (+) True G137007
TU172242 lncRNA downstream 389238 18932424 ~ 18933248 (+) True G137016
TU172261 lncRNA downstream 421348 18964534 ~ 18972066 (+) True G137031
AMCG00012456 mRNA upstream 28811 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012457 mRNA upstream 49946 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012453 mRNA upstream 74832 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012452 mRNA upstream 99066 18416963 ~ 18442351 (+) True AMCG00012452
AMCG00012451 mRNA upstream 126505 18402305 ~ 18414912 (+) True AMCG00012451
AMCG00012458 mRNA downstream 2392 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012466 mRNA downstream 353228 18896414 ~ 18908734 (+) True AMCG00012466
AMCG00012464 mRNA downstream 372032 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012465 mRNA downstream 390398 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012471 mRNA downstream 504311 19047497 ~ 19053220 (+) True AMCG00012471
TU172065 other upstream 153111 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 407036 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 637607 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 697496 17840933 ~ 17843921 (+) True G136658
TU171753 other upstream 746200 17792251 ~ 17795217 (+) False AMCG00012423
TU172324 other downstream 626562 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 694503 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 1271739 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 1347981 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1787895 20331081 ~ 20341446 (+) True AMCG00012516