RNA id: AMCG00012466


Basic Information

Item Value
RNA id AMCG00012466
length 1782
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00012466
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18896414 ~ 18908734 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACGGCCTGTACCTGGAAGCGGTGAACGACTACATCAACGAGTCGTACGGCGAGGACGTGTGGCGGCTCATCGAGGCCCGGGCCGAAATCCCACACCTCAAGTTTGTCCGCCATCAGATGTACAACGATAACCTGATCCTGCGTCTGGCCAAAGCCGCGGGGGAGGTCCTGGGGAAGACGCACGACGAGCTGATGTATGCCTTCGGGGTCTACATGGTCAAGAGGATCGGCAACTATGGCTACGAGAGGATCCTCAAGGTCCTGGGGCGTAACGTTCGAGACTTCATCAATGAGCTGGACAACCTGCATGAGTATTTCCGCTTCTCCTTCCCCAAAGTGCAGCCACCCAGCTTCTGCGTGGAGGAGGAGTGCGAGACCAGCCTCACCCTACACTACCGCAGCACCAGAAAGGGCTTCACACAGTTTGTCAAGGGACAGCTTTCCCAAGTGGGGCGTCAGTTCTACAACACAGACATCGAGGTGGAGATCCTGTCAAAGGAGGAAACGGAGAAGATGACTTATGTGGTCAGTAGGCTTGAGTTTGACTTTCGAGTTCAGCACCGCATGCCCCAGCAGAAGACAGCGCCTGGCTATGAGAAGCTGCCCATGAAGAGGGGCATCTTCTTTGACATGTTCCCCTTCAGCGTGATCTTCCGCCGGGACATGACCATGTACCGCATCGGGGACGGCCTCAAGGAGGTCTTCTCCGACCTGCAGGGCAAGAAGTTCAATGAGGAGTTCACTCTGGTGCGGCCCATGCTGGAGTTCAGCTGGGACAATATCTACACCCACCTGAACAACGTGTTTGAGCTCCTCTCCAAAGCCGTGGATATGAGGGAGCCCCCCAAGAAACCCCTGCACCTTAAGGGTCAGATGAAGTATGTCCCCCAATGGGATTCCCTCATCTTCCTCGGCACGCCTATTATCGAGACCGTGGAAGACATGATCAAAATGGGGGTGTACGTGAATGACCTGAACCTTCACGACTCCAGCCGAGAGCTCATCTTGGCTGGGACGCAGCAGTCTGCAGAGCTCCAGTTAGCACTTGACCAGGAGCAGCAGAAGTACGCCCAACTGCAGGAGATCATCAAGAAGTTGGACGAGGAGAAGAAGAGGGGCGACTCTCTGCTGTACGCCATGATCCCCAAAGCGGTGGCCGACCGTCTGCGCAAGGGCATCGGGGCGCTGGAGACGTGCCAGGTGTTCCCGGACGTGACGATCCTCTTCAGTGATGTGGTGAAGTTCAACGAGATCTGCATCCACATCACGCCCATGCAGGTGGTGGACATGCTGAACGAGATCTACATAGTGTTCGACACATTGAGCGAGAAGCACAACGTCTATAAGGTGGAGACGATCCGAGATGCCTACATGGTGGTGGCGGGGGTCCCCAACAAGACCACCTTCCACGCCCACCACATCTGCGACATGGCTCTCGACATGCTGAGCTCCATCGACCACCTCAAGGACCCTTCCACCGGGGACAACATTCAGATCCGAGTGGGGATCCACTCTGGGATGGTGGTGGCGGGGGTGggaATGCAAATCCACATCAGCCAGACCACCAAGGACCACCTTGAACACGAGCCGTACATCATCGAGGAGAGAGGCAAGATCTTCGTCAAGttttttaatagcCCTCTAATCTCTGAATCGCACAGCCAGCGTCAACATGTTAGCATGTGGGTAGCGAGCCCGTACATGAGGGGAAATGTGTGGCACAGTAGAGTGTTCTGGGCCCCAGATGTGCCCGAAACAGAGGGCGAACCCACGGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172188 lncRNA upstream 242816 18615898 ~ 18653598 (+) True G136969
TU172189 lncRNA upstream 258476 18615898 ~ 18637938 (+) False G136969
TU172078 lncRNA upstream 421498 18473233 ~ 18474916 (+) True G136873
TU172070 lncRNA upstream 425630 18433570 ~ 18470784 (+) False G136866
TU172069 lncRNA upstream 425630 18467806 ~ 18470784 (+) True G136866
TU172242 lncRNA downstream 23690 18932424 ~ 18933248 (+) True G137016
TU172261 lncRNA downstream 55800 18964534 ~ 18972066 (+) True G137031
TU172255 lncRNA downstream 111424 19020158 ~ 19026005 (+) True G137027
TU172291 lncRNA downstream 143210 19051944 ~ 19053829 (+) False AMCG00012471
TU172311 lncRNA downstream 204036 19112770 ~ 19114862 (+) True G137074
AMCG00012458 mRNA upstream 343600 18545578 ~ 18552814 (+) True AMCG00012458
AMCG00012460 mRNA upstream 353228 18541417 ~ 18543186 (+) False AMCG00012460
AMCG00012456 mRNA upstream 383808 18493584 ~ 18512606 (+) True AMCG00012456
AMCG00012457 mRNA upstream 404943 18476711 ~ 18491471 (+) True AMCG00012457
AMCG00012453 mRNA upstream 429829 18445111 ~ 18466585 (+) True AMCG00012453
AMCG00012464 mRNA downstream 6484 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012465 mRNA downstream 24850 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012471 mRNA downstream 138763 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012470 mRNA downstream 145906 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012474 mRNA downstream 191585 19100319 ~ 19109503 (+) True AMCG00012474
TU172158 other upstream 351924 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 508108 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 762033 18132407 ~ 18134381 (+) True AMCG00012439
TU171871 other upstream 992604 17902832 ~ 17903810 (+) True G136720
TU171793 other upstream 1052493 17840933 ~ 17843921 (+) True G136658
TU172324 other downstream 261014 19169748 ~ 19174421 (+) True G137083
TU172360 other downstream 328955 19237689 ~ 19238958 (+) True G137111
TU172558 other downstream 906191 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 982433 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1422347 20331081 ~ 20341446 (+) True AMCG00012516

Expression Profile