RNA id: TU172243


Basic Information

Item Value
RNA id TU172243
length 2634
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00012467
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18927379 ~ 18933201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAGAGACCTCGGAGCTCTCGGCCATGGACTTCCTGAAGAAGATCGACGGCATGATCAGCCAGTCCAAACAGGCGGCCGCGAAGAAGATCCGAGAAGGAGGGAAGGGATTAGAAGACTTCGAGCCAAAGAGCGGCAGTGCGGCCTCGTCCCAGCACCGCGCGGGGATCCGGAGCTCCGGCTCTTCTCCCAGGATGCATCAGCACCGCGCCACGCTGGGGCCGGTCCCCCTGACCGTGACCAAACGCACCCGcggcctgagagagagggaggacgAGATTTTCGAGCTGTGACCCGAGCCGAGACGCGGACTGGTCCCTGCGATCGTGAACCCAGAGAGAGATGCCATCGTTCGTCAGGAACCCCCCCCTGAATGATGTGGCGTGATTTGGACCCCCCCTCCACAGAAGTGCTCTCAGGGAGGGAGCAGCTTTTAAAACGCTGGAGAAATGTGGCCGCCTGTCTTTTTGGCGTGCCTGGGGCAATGGAATGTGACCTTGTGACcctgtgacctttgacctagGTGCAACAGTGAGTTACTTTAGAATGCCTGTGTTCACATatttttcagcttcaatcaacaataatgatataaaatgaatattttagtATTGTTGAATGGCTGAATGTTTCCAGGTCTAGGCCTATTAATCCCTCTGAATCTCGATGGCCTCCGAAACCACAGGCAGATTTGCCCCCCTcgatttatgcatttatttattttgagtggtaaaacatgatttaatcCATTCAGGCTTcctgacaagaaaacaaaagttttttcAAATTCGATTGACAGGTGTATGTGAATcctttatgatttttattttgcgtatcatttaaaaaaagtaatgtcGGGGCCTCTATGCACTGAATAAAGCTagagatttttagtttttaggtattttattttgcattgcgGTGCGCTGCTCTGCGTGTGTACAAACGGTGTGCATAGCATTTTATTTGAACCACATAGATAGATGGTGACGGGTGTTGCTGTTGCGCAGTTATGTAATGCTCAGCCAGTCAAGAGCATGACAAGAATGACAGGAATGGGAAAATGGACTGAATGGGACATTCATTCTGAATTGTATGTATCCTGGTATTGCCTTGATTGTGatgtctgtatatatagtagttctcaaccctggttctggagaagccactaccctgctggtttagctctcaattacttaattgaaccttaattgaactaattatcaAAATCGGAgccttttgattatttttaaccGTAGaggtttttaaatgaagtataAAATTGCATAAGGAAATTAtaatcttattaaggaaccaatgttctatcagttacacaatttaaagtcaaatgtaatcaaattagttcaattaagggtttaattaagtaattgagagctcggttaaaacaaaatccagcagggtaggtgATTTTCCAGGACTAGGGATGGGATCCCCTGTCTTAACGGTTATTAAAGACTCTGAGAGCTCATGTCGCCAAACCCAAGTGCCAGTCCCAGGGCAGTCTCCATGAACTGCACACTTTGTCTCTGTGGGGACGAGGGTCAGAcccctttttaattaaattttttaCCTGTTTTCCGTGTGATGCCCTTGGGGAAATGGGGCCATAGATTTCTCCCTTTCGCTGTATGTAATTTAGTTCTCTTACACCTTCAAACTCAGTCCCATATCGACCTGTCCAATGGCCTGATTGGTTGACTTTGTTTTCCTCTATGAGTCATTTTTGTGCGTCTgaacatctgtttttatttttcatgaaacCAGGAGAATAACCTCCTCTCCTGCTACACGACCTGAGCTCTTATCAGCCTTGCACTGGCAGACAGGATGCTCTCACTGGTGGTTTATATTCAGCAAGGAAGCAGTGAAGATTGTAAAAGCACCGACGACGCACAGGTTGAAGGAGAAATTCGTCTGTGTTCGCCGCTCTCTGCCTGGAGTTGGGGTGCCACTGACGTATTTAAAATGTCCCATAGATTTGAATTTGGGCAAATGAAAAACTCAACTTTCAGccatttttatgtattgaaaacATATGTTTGTGCCCTATGGGTTAGTGTAAAATGCATCGTATTCATGCTCAAAATTGACCAGAGTGTGgttatatacagacaggtgacaaattaatgggattttgacctcgattttggatcaagatggtaAGAGGGATctaaggatctaagtgactttgaaacaggggtcattattggggctcCATAGGCACtagtctacagagatgtgggaaaaagtgatctggtcacatgagtcatccttcaccatattctcgacaagtgggcgagtgcatgtgtgacgacaccaagagaacaggacaggcctgactgctggacccctacagtgaggtgGTCTGGAGGCTCCGTTATACTGTGGGGgccattttcctggcatggtttgggttcacttgtccccttagagggaagtgtcatgatttgcagtgaccaggttattctgagtgatcacctttatcctatggtgacacatttctctcctgatgggagtggtctcttccaggataacaatgccccatccacagggcacgagggctcactgaatggtctaATGAAgatgacaatgatgtgaatcatatactgtggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172240 lncRNA downstream 1036 18925545 ~ 18926343 (-) True G137014
TU172233 lncRNA downstream 24541 18902473 ~ 18902838 (-) True G137008
TU172222 lncRNA downstream 140224 18786956 ~ 18787155 (-) True G136997
TU172186 lncRNA downstream 313122 18614039 ~ 18614257 (-) True G136968
TU172169 lncRNA downstream 371266 18553007 ~ 18556113 (-) True G136955
TU172337 lncRNA upstream 248998 19179139 ~ 19181358 (-) True G137094
TU172507 lncRNA upstream 574743 19504884 ~ 19509198 (-) False G137214
TU172533 lncRNA upstream 687386 19617527 ~ 19622445 (-) True G137232
TU172504 lncRNA upstream 696343 19626484 ~ 19635067 (-) True G137214
TU172553 lncRNA upstream 837987 19768128 ~ 19774086 (-) True G137248
AMCG00012462 mRNA downstream 275487 18615913 ~ 18651892 (-) True AMCG00012462
AMCG00012463 mRNA downstream 325436 18595201 ~ 18601943 (-) True AMCG00012463
AMCG00012461 mRNA downstream 358294 18568849 ~ 18569085 (-) True AMCG00012461
AMCG00012459 mRNA downstream 390310 18516836 ~ 18537069 (-) False AMCG00012459
AMCG00012455 mRNA downstream 451231 18469995 ~ 18476148 (-) True AMCG00012455
AMCG00012469 mRNA upstream 9831 18939972 ~ 18954308 (-) True AMCG00012469
AMCG00012468 mRNA upstream 29675 18959816 ~ 18967559 (-) True AMCG00012468
AMCG00012473 mRNA upstream 89354 19019495 ~ 19026095 (-) True AMCG00012473
AMCG00012472 mRNA upstream 102662 19032803 ~ 19043367 (-) False AMCG00012472
AMCG00012475 mRNA upstream 186157 19116298 ~ 19120008 (-) True AMCG00012475
TU172106 other downstream 549082 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 690123 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 826752 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 1156413 17768060 ~ 17770966 (-) False AMCG00012414
TU171825 other downstream 1165925 17759979 ~ 17761454 (-) False AMCG00012416
TU172290 other upstream 102462 19032603 ~ 19043449 (-) True AMCG00012472
TU172487 other upstream 511786 19441927 ~ 19507394 (-) True G137199
TU172548 other upstream 784021 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 814194 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 974281 19904422 ~ 19910378 (-) False AMCG00012503

Expression Profile