RNA id: AMCG00012476


Basic Information

Item Value
RNA id AMCG00012476
length 1851
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00012476
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19271310 ~ 19273160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACTTGTGCGATGGTCCCCAGCGGACAGCCTGGCTGGCTGTTCCAGTCTTCCTGCTCATGGTGGGGCTGCAGCCCTGCTTGGCCGAGTCGACCTGGCCCTGCCCCGCGCGCTGCGAGTGCCGACCCGATGTGCTGGAGGTGAACTGTTCCAGCCGGCGCCTGACCTCCGTGCCAGACGGTCTGTCAGCGGAGTCCCAGCGCCTGGACCTCTCTAGGAACCGGCTGAAGATCGTGTATGACGGGCAGTTCGTGGGGCTGTCGCGGTTGCAGGAGCTGGATCTGAGTGAGAACGGCATCTCCATAATCGAGATGGACGCCTTCCGGGGCCTGCAGGGCCTGCGGACGCTGTGCCTCCGGGGCAACCGGCTCAAGATCCTGCTTGTAGGGGTGTTTGCCGGACTGCCCAGCCTGCGCTTGCTAGACATTAGCGAGAATGAGATCCTGGTCTTTCTGGACTACACCTTCCGGGAGCTGTCCAACCTGCGACAGCTGGAGACAGGCGAGAACGACCTGGTGTTCATCTCACACCGGGCCTTCTCTGGACTACAGAGCCTGCAGGAGCTCAACCTGGACCGTGCCAACCTGACGGCGGTGCCCAGCGAGGCCCTGTCCCAGCTGCAGAGCCTCTCCCTGCTGCGCCTGCGCCGGCTCAACGTCAGCGTGCTGCCCAACCACGCCATCCGCCGGCTGCACCGCCTGCGCACACTGGAGATCTCCCACTGGCCGCTGCTGGACTCCCTGAGCAGCAACAGCCTGTTTGGGCTCAACCTGACCTCCCTAACCATCAGCAACTGCAACCTCACCTCCATCCCCTACGCCCCTATCCGCCATTTGGTCTACCTCCGCTACCTGGACCTCTCGTACAACCCCATCTCGGTGGTGCGCGCACACCTGCTGGGGGACCTGCTGAGACTGCAGGAGCTGCACCTGATTGGGTGCAGCCTGGTCCGCATCGAACCAGGGGCTTTCCGGGGGCTGTCCCAGTTCCACCTGCTCAACGTGTCCTCCAACCGCCTGCGCACGCTAGAGGAAAGCGTCTTCCACTCGGTGGGCAACCTGGAGACCCTGCGGCTGGATGGCAACCCGCTGGCCTGCGATTGCCGGCTGCTGTGGGTGCTGCGGCGCCGGCTGCGGCTCAACTTCGACGGCCGCCAGCCCTCCTGTGCCTCACCGGAGAAGGTGCAGGGCCGCCTCTTCCGGGACTTCACCGAGGCTGTCCTCCCGGGCCTGTTCACCTGCCGCCAGGCCCGCATCCTGGACCGCAAGCCCCAGGAGGTGCGGGTGGAGGAAGGCAGCACCGTGCTCATCTTCTGCAAGGCCGACGGAGACCCCCTGCCCTCCGTCACCTGGCTCACCCCGCACCAGACCCCGCTGTCGCCCAGTGGGAGGATCCGAGTCCTGGCCAACGGGACCCTGGAGGTGCGCTACGCCCAGGGCCAGGACAGCGGAACCTACCTGTGCGTGGCCAGCAACGCGGCCGGCAGCGACAACTTCTCTGTCAGCCTCCAGGTGAGGGGCTTCTCCCCGCTGCGCAACCGGACTGCATTCTTCCCCCCAGAGGTCGGGATGCCCCCCACCGCATCCAACTcttcctccgcctcctcctctgCCCAGCCCCCACAGCCCTTCCCCTTCGACGCCAAGACCCTCATCATCGCCATGACCATGGGCTTCCTATCCTTCCTCAGCTCCGTGGTCATCTGCTTCGTTTTCATGTTCTTCTGGAGCCGGGGTAAGGGCCAGATCAAGCACACGGCCACCATCGACTTCGTGCCGCGCAACTCTGTCGGGGGAGGGGGCAGCGGGGACGGGGCCGAAGGGGGGCGCTTCACCATGAAACTCATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172357 lncRNA upstream 34522 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA upstream 35379 19234410 ~ 19235931 (+) False G137110
TU172318 lncRNA upstream 110167 19139125 ~ 19161143 (+) True G137080
TU172316 lncRNA upstream 144997 19125841 ~ 19126313 (+) True G137079
TU172311 lncRNA upstream 156448 19112770 ~ 19114862 (+) True G137074
TU172388 lncRNA downstream 48846 19322006 ~ 19322259 (+) True G137130
TU172394 lncRNA downstream 59168 19332328 ~ 19349057 (+) True AMCG00012480
TU172414 lncRNA downstream 88184 19361344 ~ 19395753 (+) True G137144
TU172428 lncRNA downstream 150393 19423553 ~ 19425538 (+) True G137155
TU172454 lncRNA downstream 231723 19504883 ~ 19509198 (+) True G137177
AMCG00012474 mRNA upstream 161807 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 205397 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012471 mRNA upstream 218090 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012465 mRNA upstream 333832 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012464 mRNA upstream 346261 18915218 ~ 18925049 (+) True AMCG00012464
AMCG00012479 mRNA downstream 4556 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012481 mRNA downstream 27653 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012480 mRNA downstream 61536 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012483 mRNA downstream 188131 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012484 mRNA downstream 203222 19476382 ~ 19483546 (+) True AMCG00012484
TU172360 other upstream 32352 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 96889 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 726820 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 883004 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1136929 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 541765 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 618007 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1057921 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 1157765 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 1157876 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile