RNA id: AMCG00012478


Basic Information

Item Value
RNA id AMCG00012478
length 1056
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00012478
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19196597 ~ 19204742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCATACTTAACCCGGTGCAGTCTTTCAGGTCTTtgctggaagaaaaacaactcaGCTCCTTTGTCAGGGTCTACAGAATGCTGTGCGGGAGTCTGCTGATCACGGTGCTGTGTGGAGTGGTGGCGGCTCATCTCCACCTAGATCCTGACCTTGACATTCACTGGGAGCTGTGGAAGAAAACCCATGGCAAGTCCTACAGGAGTCAGGTGGATGAGGGGGAGAGGCGTGTTCTTTGGGAGAAGAACCTCCGACTGATCTCCCAGCAGAACCTGGAGGCCTCGCTGGGCATGCACAGCTACGAGCTGGGCATGAACCACCTGGGAGACATGACCACTGAAGAGGTGTTAGCCATGCTGGCCGGCACTCGGGTCCGGCCGGGTATCCAGAGGGGCACCACCTCCTTTGTGCGTTCCTCTGGGGCCCCTGTCCCTGATGCCATCGACTGGAGAGACAAGGGCTGCGTGACTGAAGTGAAATACCAGGTGAGGCCAGGAGTGGAGAGGGCAAGACAGggtgCCTGTGGGTCCTGTTGGGCGTTCAGTGCTGCAGGTGCTCTGGAGGGCCAGCTGAAGCTGAAGACTGGCAAACTTGTGGACCTCAGCCCTCAGAACCTGGTGGACTGCTCCTCCAAATACGGCAACCTGGGCTGCAATGGTGGCTACATCGATGATGCGTTCCATTATGATGGACAGTGCCGGTATGATGTTGCCAATCGGGCCGCCAACTGCAGCAGCTACAGCAGCCTCCCTGAGGGTGATGAGAATGCCCTCAAAGAAGCCCTTGCCACCATTGGGCCTATCTCTGTAGTCATCGATGCCACCCGGCCCCAGTTCCTCTTGTACAAGAGTGGTGTTTATGATGACCCCTCCTGCACTCATAATCTGAACCACGCAGTGCTGGCAGTGGGATATGGGACTCTGGATGGAAAGGATTTCTGGCTGGTGAAGAACAGCTGGGGGAAAAGTTTCGGTGACCAAGGTTATATTCGAATGGTCCGGAACAAGGATGACCAGTGCGGGATCGCTCTGTATGCCTTCTACCCCAAGATGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172337 lncRNA downstream 15239 19179139 ~ 19181358 (-) True G137094
TU172243 lncRNA downstream 266456 18927379 ~ 18930141 (-) True AMCG00012467
TU172240 lncRNA downstream 270254 18925545 ~ 18926343 (-) True G137014
TU172233 lncRNA downstream 293759 18902473 ~ 18902838 (-) True G137008
TU172222 lncRNA downstream 409442 18786956 ~ 18787155 (-) True G136997
TU172507 lncRNA upstream 300142 19504884 ~ 19509198 (-) False G137214
TU172533 lncRNA upstream 412785 19617527 ~ 19622445 (-) True G137232
TU172504 lncRNA upstream 421742 19626484 ~ 19635067 (-) True G137214
TU172553 lncRNA upstream 563386 19768128 ~ 19774086 (-) True G137248
TU172579 lncRNA upstream 695464 19900206 ~ 19900440 (-) True G137270
AMCG00012475 mRNA downstream 76589 19116298 ~ 19120008 (-) True AMCG00012475
AMCG00012472 mRNA downstream 153230 19032803 ~ 19043367 (-) False AMCG00012472
AMCG00012473 mRNA downstream 170502 19019495 ~ 19026095 (-) True AMCG00012473
AMCG00012468 mRNA downstream 229038 18959816 ~ 18967559 (-) True AMCG00012468
AMCG00012469 mRNA downstream 242289 18939972 ~ 18954308 (-) True AMCG00012469
AMCG00012477 mRNA upstream 2607 19207349 ~ 19251412 (-) True AMCG00012477
AMCG00012482 mRNA upstream 95753 19300495 ~ 19323213 (-) True AMCG00012482
AMCG00012485 mRNA upstream 211205 19415947 ~ 19417276 (-) True AMCG00012485
AMCG00012490 mRNA upstream 305495 19510237 ~ 19517748 (-) True AMCG00012490
AMCG00012491 mRNA upstream 328738 19533480 ~ 19537105 (-) True AMCG00012491
TU172290 other downstream 153148 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 818300 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 959341 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 1095970 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 1425631 17768060 ~ 17770966 (-) False AMCG00012414
TU172487 other upstream 237185 19441927 ~ 19507394 (-) True G137199
TU172548 other upstream 509420 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 539593 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 699680 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 1056260 20261002 ~ 20270864 (-) True G137408

Expression Profile