RNA id: AMCG00012479


Basic Information

Item Value
RNA id AMCG00012479
length 5394
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00012479
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19277716 ~ 19294096 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAACATGAAATTTCTGGTTATTTTGTCGAACTGTCGACCGGGGAGGCGGGATACTGACGAATTGCGGACGTGGGCGTTTGCAGATGGATTGTGTCGACCGGACGCAGGGCACCTTCTGGGTGACAGGGCAGGAGTCACATTTACCCCGTCCCCCGTGACGTGCCTGGCTTTTGACCCGTTAAAGCCCGCACGGTTTCATTATGCCAACCCTGAGAACTACACATCGCTTTTCCACCAAGAGGGCACTGACGTCATCTATATTGGCGGCCGAGCTGTGATCTATGTGCTGAATTTCACGGAATCCGGGCTGAAGGAGACGCAGATTCCGGTGACGTTAGATGAGAATGGCAGAGAAGCCTGCCTGGACAGACGTGCTGCACCAGAAgccGAGTGTGAGAACTTCATCACCGTTATTCAGAAAGTCAACGACACTTTTGTGATCTGTGGCACAAATGCTGGTAGCCCCAAGTGTTGGCTTTTGCAAAATGAAACTGAGCTGACAGACACAACCAGCAATGGCCAGCTGATGGTGGCCTCCCACATCACCCCGCCATTCCCCTCTCAGCGATCCATCAGTCTTTCCACAGagGGGAACCTGTACTCGGCGCTTTCCGCATCCGGGCAGGGGGGAGGCTCAATCCGTCGCACCTACGGCCCCCGCAGGCTGCTGAAGACTGAGGACAAGTGGCTGCAGAACCCTGAGTTTGCTGGTGCGGCCATGGTCCCCGGGGTGTCTAGCCACAAGGAGGAGATCTACTTCTTCTTCAGCGAGAAAAACAGGACAGCCACTGTAGACGAGGACCCTTACCGGGCAAGAATTGGGCGTGTCTGCAtgGTGGATGAAGGGGGCATCAAGAACGTTCTGCCCGATTCCTGGACCACGTTCCTGAAGGCTCGAATCATGTGTGGTGTGCGCAACAGCCCCCAGCAATACAATCGCTTCAAGGAGGCCTTTCTCCTGACTGGTGTGGAGAAGAGGACCGGAGTCCTGTACGGAGTCTTCGCCAATGCCTGGGACTCTACTGTGGTGTGTGCTTACTCCATCGAGGAGATAGACAAGAGTTTCAGCACATCCAAACTGAAGGGCTACAGCAGCAGCCTGCCAGCACATCGGCCCGGAACGtGTGCGTTTAAGAATGTCACCTCCACCTTGGCAGCCAAGACCCTGAGCGTGATCCGAGACCACCCCGAACTTGAGGGCGCCATCCAGCCAGTGGGGAAAGGTCCTCTGACCCTGCCCACCACGCAGAGATTCACCAAGGCCGCTGCCGACATGGTGCTGGGAGTCAACGATGAACACTACAGCATCCTGTACCTGGGCACAGTTACCTCCCTGGCCATTGACTCCCAGAAGGGCCACCTCTATGTGGGCACCTCCTCTGAGATACAGCGCCTCCCCCTGGCGGACTGCCGACTCTACGGGGACAGCTGCCGAGAATGCGTCCTCTCCCGCGACCCATACTGCGGCTGGGACAAAGGCAGTGACAAATGCGTGGCGGTCCCCAAGGGATACAATATCAGCTCTAGCAGCACCATTCTTCAAAGCCTGGACCAATCCAACACCTCCGTGTGTGGAGACTCTGCAGaTCTAAAGGCCCCCAGCACTGACCCCAAAGAGGTGCTGGTGGATCAGGACAGCCCAATCCTGCTGCCATGTCCGGTCCGTTCCTACCACGCCTACTACACCTGGGAGAAGGACAACTGCCAGAAACGTTACCCCTGCTCTATCAGCGGGGGGTCCTGCATCCTCGCGCCCACCCCTGACCTGCCCCTCAAAGAGGGCATCTTCCGCTGCGTGGCCCTGGAGAATGGCCGCAAAGAGGAAATCGTCTCCTACCACCTGGTCTTCAACGGCGCCCTCCCCAGTGCCCCGGCCTGTGCCTCCCTGGCTACGTCCTTCCTGCTAGCAGCCATTACTGTCTGGCTACTGTAGGAAACCCATCACAGTGTAGCAAAGAGAAATCGCTATACTGCCATTTCTACTACTGATGATACAGTGGAGGGTCAGTCCACTAAGCACTTAGCACTTTGGTACCTGGTTTCAGTGcttagtggggaaaaaaatattaaatgaaatgcaaaagtgCAAAGAAGtcttacatatatgtattattattattattattattattattattggttttaaatatGTTGCCTGCTGTAGAGAtgctgctttctttttttcttcagcaaCTAAAACCTGAGATCAGTGAAAATGCACCTTATTTAGGATATTGAGAATTTTAGTTTGgcgtatttgtttttaatgcaagtATATATCTGGGAACTGAGAATGGCTCTGTATGATTTACCGCTGGTTCACGAGCTGATCCTTCCTTGGTGACACGCAAGCTTTATTTTTGGCTGTTGCTGGGAGATctgaagtttttcttttttttttcataacacATCCATAGGctgattgaaaaaaataaaataaaacgagACGTTTCTTATTCAAAATCACCTTTCAAACTCTACttcgattaaaaaaaatccttttcttGATACAAAGgcagttatcttttttttttcccagtttcTTGGATAACCAGGTACCAAGTCATGGCAGTGCTAAGAACTTTGTGTACACGGACCCTTGAGTTGTGAGAATATGATTCTTACACTCTATTGTTACTATAATTTATTTGGGGGATGGGGGATtctctacattttaaaattgaatgttAAATTATGGATTTGTGTAGTGGGGAGCCctaaagaaaattacaaaaaaaatcctacaGAAATCTAATATACCGTGTGTTTATATGTACTCAGAGCCATCCCATTTTTCAACAGGCAGCCTCAACTAAGCTAGCAAACTGACTTGGCACAACACCAAACCAAAAAGGGAGCAGACACAAACCGTCAGCATCTTCAATTACAGGGGGCGGTGTGGGAATCCTATACGAATCCACTTTTGCCTGGCCTTCATTCTGTAGAAAACCACGGAATTTTGCAGGATTCTAGATTCTTCTATTACAACAAACAATCTATACATAATTATCTtgacaggggaaaaaaagattaacgcactgcatgcattttgtattaGCTGTGAAAACTGGCTAATTGATGCATTGATGCTGGTTTCCGTTTACTCGGCAGAACTGAGCAAAGATCTCTAGCGATGTGGACAGTAAGCATTATGAATCTACTAAAACTCACAGGTGGACAGGAATATTTTCACACTTTGCCAGAATGCCTTTAAAGCAGGGATATAGAAACTCAATGCATGTTCAAACATCTCTTCAGTTTCCACCTTGCTGCTGTCTCCAGGCTAGAAATCTCGATAAATTGCTCTGTAGGTTTCCAtaggatttttttctctctttttttgtgggtttttttaATAGGAGAGAAACAGGAGAGGCAATTTAAACTGGTGTGACGGAGACTGATGATTGCCACAGAGGATTATGGGTAGAGATTGGGGTTGTTAAACTCTTGTTGTCTTGCCCACGCTCCATACTTCGTACTGGTTAACCCTGGCACCAACAGAAATCAACAAGAATTTTGAATTGGAATGTAATAAGACTAACAACCaagaggagagaagagggaaCAAATAATTTGTCACAGAtcacaaacttaaaaaacacCACATCCCTCTCCTTGCCTCTCCCTCCTTTTCTCCAGTCGATCACATGTTTCTACGGTGGCTCGTTAatgccatgaaaaaaaaacgTAGTTATGTCACGATCACAAGAAAATCTCAGGATGTCGATATTACAAGCCAGTAGGAGGTGATGGGTAATCCGTAGCTAGATCCttttttggttgtgttttgttttccctgcatATGACCTCAACGAGCCACCGTATGTCTCCCCAGTTTTTGCCAATTCGTTTTTCTCGCCTCGTAAGGAACACGCTGTCACGGGTTTGTGACGTATTGAGCTGCTCTTTTGATCACCTCATCTGCCTCGTGCTTTTTGTACCTTTTTGCACTGTCTGTGCCTCCTGCCAAATCACTCCTCTCGTTTTGCACTCAGTCACTGGCACATTCGCTCACTGCCCATTCTTGCGTGCGCAAAACGACCCATCGATCCTTTTCGGGTTTGACCCAGATTGCGTTTCTTTCACAAGGAATGAACTGACGTTATCTCCCTCACATCACACAAATGAAGTGGAAAGGGAGGATATATCTGATATCCAAATTAGTCAGGTGGACAGCTGTCGTGCTGTAGTCGCAGACGTTGTTTGAGCGAGCAGTTTACACGCAGAGAGAACCATGATATGGGAGAATTAGATGGTGATATCCACAGTCGTCATCGTTTCTCTGCCATCTTGGAGACCGTAACAGTACATGTGTCAACCTATATCTTTAAAATGGAGTGAGATCATCGACATTTGCACATGAATGTtggtttcatgttttgttttttggttgttttttaattttttaacctGATCCTCCTGAGTTTTTGACGCAAACATGCACTCGCATCATCACTTCACGATCACTGCAGGGAAACTCCACCAAAGTGCAGATGTGCTGTGCGCAGTAGCCCCTTAACCTCAAGGAACTAAAGGGAAAGGATCAGGGGATGAAATCTCATGAGATGGGTTTTTGGTTTTATGCACCTGGTCCTGTCAAATCGTTGGtgactttctgtgtgaagagaTGCGATCGCTGTGTTTCTAGTGATGAGACTCAAAGACTGTCCAGCACTAGCCAAAGGCAACTGACAGACTGAtctatattaattttatatgaattaCAGGTTATCTCCCTTGCAGTAAACCTGATTGATGTCTGCAtctttttttcaatttcttccCCTCAACCACTCTTTTTCACCATCGTCCCTTAATTAAATAAGATGTGGGCCTCTCTGTAGTAGTTAAGTGAGTTGCTGTTCTATAAGAGTTGCAGATCTTAGAATAACCGTGCGATTTTCGAAGCCTGCAAAATGATTTTCTGGGAACCATTCTTGTTTAATTATTACAGCTGTTCTTCAACGTAGTAACATATTTGTGAGAAAACAAGAGCTGGTctgatatatattattgtattgtactgtgggGTTCTGTCCAAGACAAGACTCAAAACCCGTTCTCCCACGCCACAGTGCAGCGACCTGACCGCAACACTACAAGGCCCAGGCCCAGGCCAATATTTagaatcttgtttttttttaggtttattcaatgtttattttatagtttttttagaTAAGTGTGCAATGTGAGATGCAAGCAGGCTCCTTCCAAAAAGAGTTCATAGCATGAAACCGAAGTTTGTGTCTGGACAGTCTTTGAACGAACACACCATTTGCCAAACACATTGTGATAACCTAACATGCACCATTATCTacatacttttatatattttttaaaaaacaatatataatatatatatacatactataaatatatgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172357 lncRNA upstream 40928 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA upstream 41785 19234410 ~ 19235931 (+) False G137110
TU172318 lncRNA upstream 116573 19139125 ~ 19161143 (+) True G137080
TU172316 lncRNA upstream 151403 19125841 ~ 19126313 (+) True G137079
TU172311 lncRNA upstream 162854 19112770 ~ 19114862 (+) True G137074
TU172388 lncRNA downstream 27910 19322006 ~ 19322259 (+) True G137130
TU172394 lncRNA downstream 38232 19332328 ~ 19349057 (+) True AMCG00012480
TU172414 lncRNA downstream 67248 19361344 ~ 19395753 (+) True G137144
TU172428 lncRNA downstream 129457 19423553 ~ 19425538 (+) True G137155
TU172454 lncRNA downstream 210787 19504883 ~ 19509198 (+) True G137177
AMCG00012476 mRNA upstream 4556 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012474 mRNA upstream 168213 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 211803 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012471 mRNA upstream 224496 19047497 ~ 19053220 (+) True AMCG00012471
AMCG00012465 mRNA upstream 340238 18933584 ~ 18937478 (+) True AMCG00012465
AMCG00012481 mRNA downstream 6717 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012480 mRNA downstream 40600 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012483 mRNA downstream 167195 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012484 mRNA downstream 182286 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012489 mRNA downstream 202351 19496447 ~ 19501256 (+) True AMCG00012489
TU172360 other upstream 38758 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 103295 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 733226 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 889410 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1143335 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 520829 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 597071 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 1036985 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 1136829 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 1136940 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile