RNA id: AMCG00012480



Basic Information


Item Value
RNA id AMCG00012480
length 735
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00012480
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19332328 ~ 19350202 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCAGCCTAGAACCCAGCCCTGTTGCCAACAAGCTCCTTCTCCTCACCCAGCAGCAGATCCAGTCCTCGGGTTTGGACTTTGCTGCAGTCTCGGTTATAAagcTGTTCTCCAGGCCCACTCTGACAGTCAGCCCTGCAGGGTCAGtgtgggagggagagacagtgaCTCTGCAGTGCGACACTGAGGCACACAGAGCTGACACACAGCTGAGCTACACATTCACCAGAGACACCGAGACCCTGAGAGCAGCGGCTGCACAGAGTCAGCACATCGTCCCTGCAGTGACGAGAGGGGACTCTGGACTGTACCAGTGTGAGGCGCAGGCTGAGGGGACGAGTGTGAAGAGATGGAGTGACGCTGTGTGGGTGACTGTGTCAGAGGGCCGGCCTGCAGCCACACTGACCGTGGAGCCACCCTGGAGGCAGCTGTACGCCCTGGAGCCAGTGTCTCTGAGGTGTGGGCTGTCAGGGGCCCCTACAGGCTGGACATACCGCTGGTACAGAGATGGCTCTCCCACTGCGGTGTCCCAGACTGATGGACACACTATGACCGGGGACAGGCTCTCCAtcactgcagtgtctgtgtctgatgGGGGGCAGTATCAGTGTGAGGGCATGAGGGGGAGCCAGTCATTTGTCTCTCAGCGCTCTGATGGTCTCAATCTCTCCATCTCAGCAgagccccccggccccccacACTTCAGAGTGACCTTACTGCCTGTAAAGTGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU172388 lncRNA upstream 12437 19322006 ~ 19322259 (+) True G137130
TU172357 lncRNA upstream 97908 19234410 ~ 19236788 (+) True G137110
TU172358 lncRNA upstream 98765 19234410 ~ 19235931 (+) False G137110
TU172318 lncRNA upstream 173553 19139125 ~ 19161143 (+) True G137080
TU172316 lncRNA upstream 208383 19125841 ~ 19126313 (+) True G137079
TU172414 lncRNA downstream 11142 19361344 ~ 19395753 (+) True G137144
TU172428 lncRNA downstream 73351 19423553 ~ 19425538 (+) True G137155
TU172454 lncRNA downstream 154681 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA downstream 154681 19504883 ~ 19508859 (+) False G137177
TU172478 lncRNA downstream 309544 19659746 ~ 19689785 (+) True G137196
AMCG00012481 mRNA upstream 1269 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012479 mRNA upstream 40600 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012476 mRNA upstream 61536 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012474 mRNA upstream 225193 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012470 mRNA upstream 268783 19054640 ~ 19065913 (+) True AMCG00012470
AMCG00012483 mRNA downstream 111089 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012484 mRNA downstream 126180 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012489 mRNA downstream 146245 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012487 mRNA downstream 168904 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012488 mRNA downstream 178270 19528472 ~ 19531808 (+) True AMCG00012488
TU172360 other upstream 95738 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 160275 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 790206 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 946390 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1200315 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 464723 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 540965 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 980879 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 1080723 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 1080834 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile