RNA id: AMCG00012483


Basic Information

Item Value
RNA id AMCG00012483
length 2141
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00012483
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19461291 ~ 19467495 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGTACCGGACAGCGAACCGCCAGGCCCAGAGGCCTAGAGAAGCAGCGACGGGGAGCGGAGATCTTCTTTCGCCATGTGGGGCTGGAGTCGGGGCGCCCTTGCCGGCGTGATCCGGGAGTTCAGTAAAGTGACACTGTCCTCAGCTCAAGGCTTCTCTCATTCAGCGCGCAGGagCACGGTGATCGTGGAGCGTTGCTGGCAGGTACCTTTGTCCAAGGAGGGCAAACTGGGGGGCCGAGGGGATGTGGTGTTCGTGAAGAAGTCTGTGGGCCGCAACAAGCTGCTCCCCGAGGGGCTGGCGCAAATGCTAGAAGGGACCTTGGAGAACAGAGTCCAGACCCGCACTGGACAGCTGACCGTGGAGTATCTGAAACAGTGCCGCCTTGAGGTGGGGATGAAGAACAATGTGGAGTACGTGCTGACCAAGGAGATTGTGTGTCGGCAGCTTCTCAAGAAGCTTGGCGTGTTTGTGCCACCCCATGCCCTGAATTTACCCGACGAGCCAATCAGGAGATGGGGGGAATACTGGTGCGAGGTCACGGTAGGTCAACCTCTGCTCCACTTTCTCGTGACCCTGCTGGAGGTGAATGGCATTGACACCGTCCGCATCCCCATGCCCGTGGTCAACTTTGTGAAGCCCCGAAGACAGCGCTACAACAGGTGGCTCGCGAAGAAAGAAGCCGAAACCCAAAGCACAGGCGCGGGAGAGGCTGTGAAAGAAGACTCTTAATGGAGAACTGTCCCCTCCCCGTCCCCAAAACCCACCTCTCCACCTTGGCCGCAGCTGCAGAACTGTCCAATCCCGTCCAAGGTCATGTAAAGCCTGTTCTAACGGAGAGCTGTCCCCGACCAGAACAGGAGCTCGTGTTTGGAGTGGGGCTGCTCAGCTCAGACACTGTTTGACAGAGTGTTTATCTATTTACTGAACCTCAATTAAatcgacaacaacaacaatacagaGACCACCTCTGACTGAATCTCTTTACTAGTCAAGACCTGGATCTGCAACGCAGACTTATCTTAACTACTCTGGCGAGTGGCTTGCAATTCCTTTAGCGGTGAATACATTTAAGTATAGAAAGTGTCCGGTTTCCCTTGAAGACGTACAGTGGTGAGGAGGACCATCCAGGGGACTCCCAACCCTCTGTGTCTTTTGCTCCACCTATGCTCTTGGACTCATCGAACCCTTAAATGGGGCGGTAGCTCGGCAAATCAAATTACCCTTGTAATCAGGTTTTGAAACGGACGGCTGGGTGAACATGTAATTAAAGGCCATCGAATTCTcaaaaacaaacccattttCACAAGTCAAATTTTAGCAAATTCTTAGTTTGAGTTAGTAAGTAGAGAGCAGCGCTGTTGGAACAGAAACTCTTAGGGTTGAAAAGCAAGGAGTTGGAAGTATTTAAAACTCTAGGGGGTGCTTAAGGACAAAccatacttttgttttttatgcagCTCTTTCAGATTAGTATTGGCAGAGCACTAATACTCTCACACTAAGCTGTCTAAATATTCTGTCATTTTATCACATAATTGAAAGAAGCTACAAGCatggaattaaatgaaaatgtagacCGCTCTGAGCACTGCAAACTCCAGTTGTAATAGCTGTGGACTTGTCAATCAAGACTTTGTGCTGAAGGCAAACTCACCATCTGCTTTTGATTAAGTTGGGGTCAAATTCCACATTGGGTCAAGGTCTGGGCTTTGTCATTCGCCAGTACACCTTTTAAGAAGAGGactaaatagaaacaaaataaaggaatgcTAGAGGCCTACAGGAAATTGGTAGCTTGTCAAGTACAGTTCATGTGCAGCTCTGCCCGGCCTTGACTGAGGTAGAACTTCACAGATTTAAAACCACAaccttgtaaaatgtaatttcctacCACTGTTTTTGCAGTAGTTGGTGGTTTGCTTTTCCCCTCTTTCAGGAAattgacatttttcatttgattgtgaTCTATTCAGGGTCTGCTTCACAGGGGCTCGGCAAGGAAATGAATGTGGGCCAATTTCAATACTGGACACACCGTGTGCTGCTCTAAAGAAAATACTGTTGTTcatgagaaaatacaaatttgatcaGATCACTCAGATAATTCACCCAAGGCCAGTGAatgatgtatttcaaat

Function

GO: NA

KEGG:

id description
K02939 RP-L9, MRPL9, rplI; large subunit ribosomal protein L9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172428 lncRNA upstream 35753 19423553 ~ 19425538 (+) True G137155
TU172414 lncRNA upstream 65538 19361344 ~ 19395753 (+) True G137144
TU172394 lncRNA upstream 112234 19332328 ~ 19349057 (+) True AMCG00012480
TU172388 lncRNA upstream 139032 19322006 ~ 19322259 (+) True G137130
TU172357 lncRNA upstream 224503 19234410 ~ 19236788 (+) True G137110
TU172454 lncRNA downstream 37388 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA downstream 37388 19504883 ~ 19508859 (+) False G137177
TU172478 lncRNA downstream 192251 19659746 ~ 19689785 (+) True G137196
TU172544 lncRNA downstream 321492 19788987 ~ 19793532 (+) True G137242
TU172572 lncRNA downstream 423672 19891167 ~ 19895599 (+) True G137265
AMCG00012480 mRNA upstream 111089 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012481 mRNA upstream 127864 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012479 mRNA upstream 167195 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012476 mRNA upstream 188131 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012474 mRNA upstream 351788 19100319 ~ 19109503 (+) True AMCG00012474
AMCG00012484 mRNA downstream 8887 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012489 mRNA downstream 28952 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012487 mRNA downstream 51611 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012488 mRNA downstream 60977 19528472 ~ 19531808 (+) True AMCG00012488
AMCG00012486 mRNA downstream 70051 19537546 ~ 19541766 (+) True AMCG00012486
TU172360 other upstream 222333 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 286870 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 916801 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1072985 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1326910 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 347430 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 423672 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 863586 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 963430 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 963541 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile