RNA id: AMCG00012484


Basic Information

Item Value
RNA id AMCG00012484
length 2331
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00012484
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19476382 ~ 19483546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGCATTTAGAGATTTAGAGATTGTGCTGGACTTGTCCTACAATAAGCTGGACACAATACGGGAGGAGGACTTTGCCAAGCTCTCACACCTGCGGGTCCTCCAGCTGCAGTTCAACAACATCTCTCACATCGCGGATGCTGCCTTCTGGCACAATCCACTCCTGGAGAATCTGAACATCTTCAACAACTCCCTGCGGTCAATCCCCCATGAGGCCCTGCGCCCATTGTCCAGACTCGAATCCCTGGAGATGTCCAACAACCTCTACGACCGCGCCACCCTCGGGCCCATCTTCTCCAGCTTCACCAGCCTCAAGCTGCTGTCCATGGGAGGTCCACTCATCCTGAACTTGAGCAGGGTTGATTTCCAAGCTCTTGCCAACACCACCCTGGAGAAGTTTGCTATCAAGACAGCCTCCAGCTTGCTCAGCTACGAACCGGGGACTCTCACTGTCATCCATACCAAAAACCTGTGGCTGGACGTGGCCTTGGATAAACAGCCCGACATCCTGCCCAAGATTCTGTGCGATCTGGCTGGCAAGAGATTGGCCCTCCTCCGTTTCAGGAACGTCTTTGAGTTCACATATTACACTGGCACCCAAGACCTCTTCCAGGGGCTCAGAGACATCAGGATCTATCAGCTGATTTTCTACCGGGGAAAGTTCAATGAGAACCTTCTGAGGATGGCGCTGCTCAACATGCAGGAATCCTCCATCCGCGGCCTGGGGCTGCTGTCCATCGATTTTGCCCGGGACATCAGCAATCCAGATGTGCTGCGCTTTGACTGGCGCTTCACTTGGTTCAGGGGCATCCGCCGGCTGTCAATCAAGAACGTTAACTTCAACTTCGTGCCATGCGACGCCTGGAATGAGATGGAGAAGGTGGAGGTCATGATGCTCACCAACAACCGCCTGCAAAACAGCTTCATCTACAACCTTCAGTGCATCTACCGGGACACCTTGCCTGTCCTCCAGCTCTTCAACGCCAGCACTAACGAACTCACCAGCCTGGCAAAAATGGCCGCCCTCATGGAGCACTGGCATCAGCTCCGGGTGCTGGACTTCAGCTACAATCAGCTGGGTGAAGTGCAGGAGAGCTGCGAGTGGAAGAACAACATCTCCAAGATGGTCCTCCACCACAACAACTTCGTGCACCATTCCCTGGGCTGCCTGCCCACCACCCTGGAGTACCTGGACCTCTCCTACTCCAACCTGGAGCAGCTGGACATGGACTACTTCCAGAATGCCCGCCGTCTCCAAGTTCTCCTTCTTAGCGGCAACAAGATCAAGTTCATCCCCTCCGGCTGGAAGAGCCCCAGACTTCAGTCTCTGGCAGTGGACGGCAATGCCTTTGGGCTCCTTAGCACAGGCTCTTTCCAAAACATGCCTGAGTTGTTGTGGCTAAAAGCGGGCAACAACCCCTACCACTGCACCTGCGACCTCCATGCCTTCATCGAGGAGACCACCTCCAAGGGCAAGGTCAACATCACTGACTGGCCAGCTGGCTACGTCTGCTACCATCCAGAGGCTTTACTCAACACCTTTGTGGCCAAGTTCCTCCCCGGTAAGGTGGCCTGCGATGTCCGGCTTGTGGTGGCCATCTCGGTGGTCACCACTGCCTGTGTGGTGATAGTCCTAGTGCTGCTCTGCTATGCCTTTAATGTCACTTGGTATGCTAAGGCCACCTACCAGATCCTGAGGGCCAAGTACAGAGCCAGGCAAGAAGGGGGAGACCTCTCGCGGGACTACATCTACCACGCTTTCATCTCCTACAGCCACTCAGATGCCGAGTGGGTCAGGGACTATTTGCTGCCCTGCCTGGAGAGCAGCGTGCCCCCCTATCGCCTCTGTATCCACGAGAGAGACTTCATGCCAGGCAGGTGGATCATAGACAATATCATCGAAAACATCGAGAACAGCAAGAAGAGAGCCATTGGCAAGACCTTTCAAGACGTGGTTCTGGTGGTCAAGGAGGTTCTGGACCCTGACTCCCTGCCCAGCAAGTTCTGCAAGCTGAAGAAGATGCTCAACACCAAGACGTACCTGGAGTGGCCCCAGGAGCCCAACAGACAAGCTTTCTTCTGGGCTCAGCTGCGGGGAGTCCTGGGCAAACCCATGGCCAGGGGCGAGAGGCAGGTTAGTTGCGGGGGAAGTGGCAGGAGCAGGGCATCAGTGGTGGAGCTCCCCCTAGAGGAAACGAGGACTCCTACACAACCTCCTTCAGCAGAGAGGGTGCTGCCTCTGCCGGCATGCCAGCAGGAGGGCGAGCAAGTCTCCCTCGGCAATGTAGAAGACATTGAATGTGGACAGTCACCCGTGCAGGTTGCATAG

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172428 lncRNA upstream 50844 19423553 ~ 19425538 (+) True G137155
TU172414 lncRNA upstream 80629 19361344 ~ 19395753 (+) True G137144
TU172394 lncRNA upstream 127325 19332328 ~ 19349057 (+) True AMCG00012480
TU172388 lncRNA upstream 154123 19322006 ~ 19322259 (+) True G137130
TU172358 lncRNA upstream 240451 19234410 ~ 19235931 (+) False G137110
TU172454 lncRNA downstream 21337 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA downstream 21337 19504883 ~ 19508859 (+) False G137177
TU172478 lncRNA downstream 176200 19659746 ~ 19689785 (+) True G137196
TU172544 lncRNA downstream 305441 19788987 ~ 19793532 (+) True G137242
TU172572 lncRNA downstream 407621 19891167 ~ 19895599 (+) True G137265
AMCG00012483 mRNA upstream 8887 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012480 mRNA upstream 126180 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012481 mRNA upstream 142955 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012479 mRNA upstream 182286 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012476 mRNA upstream 203222 19271310 ~ 19273160 (+) True AMCG00012476
AMCG00012489 mRNA downstream 12901 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012487 mRNA downstream 35560 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012488 mRNA downstream 44926 19528472 ~ 19531808 (+) True AMCG00012488
AMCG00012486 mRNA downstream 54000 19537546 ~ 19541766 (+) True AMCG00012486
AMCG00012493 mRNA downstream 75108 19558654 ~ 19581439 (+) True AMCG00012493
TU172360 other upstream 237424 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 301961 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 931892 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1088076 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1342001 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 331379 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 407621 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 847535 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 947379 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 947490 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile