RNA id: AMCG00012485


Basic Information

Item Value
RNA id AMCG00012485
length 1002
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00012485
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19415947 ~ 19417276 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGATCGCTGTGCTCTGCGACGCTGGGAGAGTATCGAAGTGGGCAAAAGCCCAGCCCCCTGCCAGGGGGATGCCCGCTGTGAGAGCCCAGCCCCCTGCCAGGGGGATGCCTGCTGTGAGAGCCCAGCCCCCTGCCAGGGGGATGCCTGCTGTGAGAGCCCAGCCCCCTGCCAGGGGGATGCCTGCTGTGAGAGCCCAGCCCCCTGCCAGGGGGATGCCTGCTGTGAGAGCCCAGCCCCCTGCCAGGGGGATGCCCGCTGTGAGAGCCAAGGCCTTTGTGCGAGTTGACTCTCCTCTGTTCAAACAGCAAGTGTCCCCAGTCGTCTTGGCGCAGTGCGGAGAGAGTACGATTGAGGTGTCTGTGAAGAGAGACCTGTTTGGTACTGGCGAACTGATCGCGGCGTCAGATATCAAGCTGGGAGACTGCGCGCTCAGCCGGCAGGATGACTCTGGGAATGTCCTGGTTTTCCAGTCTGAGTTGCAGGGCTGTCGCAGCACCCTGTCGATGACTGAAGATGAGCTGGTCTACAGCTTCTCCCTCAACTATAACCCTTCCCCGATTGCCAACACTGGCATAGTGAGAACCAACCCTGCTGTTGTCCGTATCGAGTGTCTCTACCCGAGGCTTCATAATGTGAGCAGCAATGCCCTGCAGCCAACCTGGGTCCCATACACCTCCACCAAGTCTGCTGAGGATGTCCTGGACTTCTCCCTGCAGCTCATGACTGATGACTGGAGCTCCCCAAGACCCTCCAACGTGTACTTCCTGGGGGATGTGCTGAACATCGAAGCCTCGGTCAACCAGGCCAGCCACGTTCCCCTGCGGCTGTTTGTGGACAGCTGTGTGGCCACCTTGACTTCTGACCCGACCTCTTCTCCCAGTTATACTTTCATTGGGAACCATGGGTGTCTGATTGATGGCAAGGTGACTGGCTCCAGCTCTCTGTTCATGCCGAGATCCCTGAACTCCACTCTGCTCCAGATGCAGCTGGATGCCTTC

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172337 lncRNA downstream 234589 19179139 ~ 19181358 (-) True G137094
TU172243 lncRNA downstream 485806 18927379 ~ 18930141 (-) True AMCG00012467
TU172240 lncRNA downstream 489604 18925545 ~ 18926343 (-) True G137014
TU172233 lncRNA downstream 513109 18902473 ~ 18902838 (-) True G137008
TU172222 lncRNA downstream 628792 18786956 ~ 18787155 (-) True G136997
TU172507 lncRNA upstream 87608 19504884 ~ 19509198 (-) False G137214
TU172533 lncRNA upstream 200251 19617527 ~ 19622445 (-) True G137232
TU172504 lncRNA upstream 209208 19626484 ~ 19635067 (-) True G137214
TU172553 lncRNA upstream 350852 19768128 ~ 19774086 (-) True G137248
TU172579 lncRNA upstream 482930 19900206 ~ 19900440 (-) True G137270
AMCG00012482 mRNA downstream 92734 19300495 ~ 19323213 (-) True AMCG00012482
AMCG00012477 mRNA downstream 164535 19207349 ~ 19251412 (-) True AMCG00012477
AMCG00012478 mRNA downstream 211205 19196597 ~ 19204742 (-) True AMCG00012478
AMCG00012475 mRNA downstream 295939 19116298 ~ 19120008 (-) True AMCG00012475
AMCG00012472 mRNA downstream 372580 19032803 ~ 19043367 (-) False AMCG00012472
AMCG00012490 mRNA upstream 92961 19510237 ~ 19517748 (-) True AMCG00012490
AMCG00012491 mRNA upstream 116204 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012494 mRNA upstream 169488 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012499 mRNA upstream 386350 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012498 mRNA upstream 411224 19828500 ~ 19830155 (-) True AMCG00012498
TU172290 other downstream 372498 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1037650 18375330 ~ 18378297 (-) True G136900
TU172031 other downstream 1178691 18205375 ~ 18237256 (-) True G136837
TU171956 other downstream 1315320 18098180 ~ 18100627 (-) True AMCG00012437
TU171826 other downstream 1644981 17768060 ~ 17770966 (-) False AMCG00012414
TU172487 other upstream 24651 19441927 ~ 19507394 (-) True G137199
TU172548 other upstream 296886 19714162 ~ 19793531 (-) True G137246
TU172550 other upstream 327059 19744335 ~ 19793531 (-) False G137246
TU172597 other upstream 487146 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 843726 20261002 ~ 20270864 (-) True G137408

Expression Profile