RNA id: AMCG00012486


Basic Information

Item Value
RNA id AMCG00012486
length 2790
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00012486
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19537546 ~ 19541766 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGTGATCTGTTGTTGGGTCCAAGTGTGTGGGGAGCACGTTTCTGGTTTATGTTCAGAAACGTATCTTGATATGAAGAAATAATAACCTCAATTACACACCTCTTCCTTCCTGCTCCGTGTAAGCGAAGACaaaagCAGAAAGTGACGTGTCGATGACGTCACCTTAAACGCACAAAAACAGTTTGCACTTTGAAGTGACGAATGAGTGTCAGAGATGTAAGGCAGATGGATCTGTGCGCGTTTCCAAATGCTGCTCGTCAAACTGAGGATTGGAGGAGTTTTGCCCGGAAAACCATGGCATCCCAACGGAACTTTACCTCctaagtcattttaatttttttattttgtatttcctgcCCCCTgagaaggtaaaaaaaaacaacaacattttaaccCCTAGGCTCTCCTCGGATTTTCATGTCACAGCCAAGAATTCGTGCCCTCTCTCCTGATGGTACTAGGCCTCCGTCTTCTGTTTTCTCCTGGGATAGATTGTAGTGGTTCTTCCCCCTCCTTGGTACGGCTGAGAGGAAAACCACCAGATTTTTAAGTCCTGAAAGAAACTTCAGTGCCCTACACCCCTCCCCTTATCGCACAATGTCAGAAATGATTCTTAACCTGGATTTTTCCTGCGGGGGGTCCGTGGGTGGCAGGTCCAGCCAGTCCTCTGGCAACATAAAACACAGCAAGTTTGTGAAGAGACGCCGATTCCTGGAAAGAAAAGGCCTCCTTCATGACAAGCAGCTTCCCAAGCAGAAGCTGGGGCAGGAGCAAGCAAAGAGGCAGAGGCAGGGGCAAGGTGGAGGGCAAGGGCAGGGGCACAGACCCCCACAAAATTTGCCACCTAAAACCTCCCAGCCTTGGCCAAACGGGGTCCAACGCACTTTTGCACGCAACCAGCCCCCGACTGGGCCCCCAGCTTCCTCCACCAccagccccctgccccccaaagCTTCCTCCCATTCCCAGGGTCGCCCCCTTCCGCCCGCCCGCTCTCACCCCCCACCCATAGTGCAGCCCGCCCAGCTCCTGAGCGAGTTCCAGAGTGGCCTGCCGTCCTCACCTAAGCCCTTTAGGTTCCTGGCCATCGACTGCGAGATGGTGGGCACGGGGCCCAAGGGCCGGCAAAGCGAGCTGGCTCGCTGCAGCATTGTGGGGTATGACGGCGACGTGGTCTACGATGAGTACATCCTGCCCACCAACCCCGTCACCGACTACCGCACCCGCTGGAGTGGCATAAGCCGGCAGCACCTGCGCCACGCCACGCCCTTCCGGGACGCCAAGAAAGagATCCTGAAGATCCTGTCTGGGAAGGTGGTGGTGGGCCATGCCATCCACAATGACTTCAAAGCCCTCAACTACTTCCACCCGCCGGCGCTCACCCGAGACACCTCCCGCATCCCCCTCCTCAACCTGAAGGCCGGCATCCCCGAGAAAGAGCCCGCCTCCCTCAAGCGGCTCACCAAGGCCATCTTCAGCAAGGACATCCAGGTGGGCAGGAAAGGCCACTCGTCGGTGGAGGATGCCAAGGCCACCATGGAGCTGTACAAAGTGGTGGAGGTGGAGTGGGAGAGGAGTTTGGCCTCAAAGCCTGCCCCCCAGTGAGAATGAATTGGGGCTGAGGGTTGTAAAAGGAGCAGAGTGGACTCTTTAAGTTCtagcatttttttattagattttttaacAAAAGACCACTTCTCCCCTCCAGTTTCTTCTACAGATTGGCTTAAAAATATGCAATTGACGGTATTTTTTACTCCCCTTACCAGCAGACCACTCTTCAATTACACGTGTCCACAGCGGAAACAAAGCTGTACCTCCCTTTCCGCCATCCCTTAAGTGGGTTGGACAGGATACTTGAACCAGAAAGCGTGCTTGGTGTTTTACACAGCGCCTATATCCATAACACATGAGTGACGTGACCCAGGTTTGCGCCACCCTTCAGCAAACACTCCAGAGCTAAAACAGTACAGCTGGGTGGAGAGACAGGGACGTTTGGATTTTTTTGTGCAAATTCGGACACTCAAGCACAAGAGGGCGCCACAGGTCAGCTCTTCAGAACTTGCAGAGAAATTAAGGAAGTGGAAGGTGAATTTGTAGGACCTGTGATTTTCTACCGGCTTTTTAAACTATGATACAGACTTTTTTTACTTGGGTTTTTACTCCAGCCTCCGAGACCATTGCGAAAGCCTCCACAGAATCCCCAGAGGACGGCTTGTCTTGATGCTGGTTGGAGCCTGTTTGTCCTGTCTGCAATACCGGAATGCTAATCAAAATGCAATTGGTTTCGAATTTGATGACATCATACCTCAATACTGACTGAATCTGAGCGCTGCTAAAAACTATGGATATCTAGGATCCCCAAgctcattttttgttgttgatttgttgttgttgctaaggggatacatttaaaaaaaaaaacgtgcttTCTCCATGTCTTAAGATCTGTCTATgacaaatattacaatgttCTAGTTCTGTGTTCTAGAACAGGGTTCTTTCTGGTGTTCAAAATCAACAGGATGCTGACGTAATGTTTGGGAAATGTACTGgtgcaggaagaaaaaaaattataatacagatGTTTCATGTATGTGTTTCCAGTCTGcctcttttttatataatagtTGGTTTTAGCCTCTGCAGCACATTGAAATTGCTTCCATCCCAACAGCAATCTGGGTAATTTAGATCGGTTCAGTGATATTTACTCCTCAGCATTACTTACAGGAAAGCCAGAGATCAGGGGTGGCCCGGCCCCAGAGTGCTGCATTGACTTCTG

Function

GO:

id name namespace
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172454 lncRNA upstream 28348 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA upstream 28687 19504883 ~ 19508859 (+) False G137177
TU172428 lncRNA upstream 112008 19423553 ~ 19425538 (+) True G137155
TU172414 lncRNA upstream 141793 19361344 ~ 19395753 (+) True G137144
TU172394 lncRNA upstream 188489 19332328 ~ 19349057 (+) True AMCG00012480
TU172478 lncRNA downstream 117980 19659746 ~ 19689785 (+) True G137196
TU172544 lncRNA downstream 247221 19788987 ~ 19793532 (+) True G137242
TU172572 lncRNA downstream 349401 19891167 ~ 19895599 (+) True G137265
TU172654 lncRNA downstream 623517 20165283 ~ 20228036 (+) True G137332
TU172659 lncRNA downstream 628660 20170426 ~ 20237873 (+) True G137337
AMCG00012488 mRNA upstream 5738 19528472 ~ 19531808 (+) True AMCG00012488
AMCG00012487 mRNA upstream 13864 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012489 mRNA upstream 36290 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012484 mRNA upstream 54000 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012483 mRNA upstream 70051 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012493 mRNA downstream 16888 19558654 ~ 19581439 (+) True AMCG00012493
AMCG00012492 mRNA downstream 75972 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012495 mRNA downstream 221237 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012497 mRNA downstream 275753 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012496 mRNA downstream 310387 19852153 ~ 19856703 (+) True AMCG00012496
TU172360 other upstream 298588 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 363125 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 993056 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1149240 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1403165 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 273159 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 349401 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 789315 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 889159 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 889270 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile