RNA id: AMCG00012489


Basic Information

Item Value
RNA id AMCG00012489
length 631
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00012489
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19496447 ~ 19501256 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGTCTAGGATCTTCTGATATTGGATAGTCTATAACAAAGGATGGTTTTATGCATAATTGATCACGACCGTCTCTCGTGTGGGCTGGATTATGGGATTGACTGAACCACTTCAGGTAACCAGAGTAGTTGAAAATGGTGTCCCAACTGGAAACCGCAATGGAGAGCATGATCCGGGTTTTCCACCAGTATTCGGGGAAGGAGGGTGACAAGCTCAAACTGAGCAAGGCCGAGCTCAAGAGTCTTCTGCAAGGGGAGCTCAGCGACTTCCTGGCATTGAAAATGGTGTCCCAACTGGAAACCGCAATGGAGAGCATGATCCGGGTTTTCCACCAGTATTCGGGGAAGGAGGGTGACAAGCTCAAACTGAACAAGGCCGAGCTCAAGAGTCTTCTGCAAGGGGAGCTCAGCGACTTCCTGGCAGCTAGCAAGGACCCCCTAGTGGTGGATAAGATCATGAAGGACCTGGATGAGAACCGTGATGGTGAGGTGGACTTCCAGGAGTTTGTGATCTTGGTGGCTGCCCTGACTGTGGCCTGCAATGAGTTCTTTGAGGCGAGCATGAAGGACAAATGAACTCTTCCCCCATCTTGGTGCCTCAGCCTGGCCTTGTAGCCCAAACTTCCTTTCC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23758 S100A1; protein S100-A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172428 lncRNA upstream 70909 19423553 ~ 19425538 (+) True G137155
TU172414 lncRNA upstream 100694 19361344 ~ 19395753 (+) True G137144
TU172394 lncRNA upstream 147390 19332328 ~ 19349057 (+) True AMCG00012480
TU172388 lncRNA upstream 174188 19322006 ~ 19322259 (+) True G137130
TU172358 lncRNA upstream 260516 19234410 ~ 19235931 (+) False G137110
TU172454 lncRNA downstream 3627 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA downstream 3627 19504883 ~ 19508859 (+) False G137177
TU172478 lncRNA downstream 158490 19659746 ~ 19689785 (+) True G137196
TU172544 lncRNA downstream 287731 19788987 ~ 19793532 (+) True G137242
TU172572 lncRNA downstream 389911 19891167 ~ 19895599 (+) True G137265
AMCG00012484 mRNA upstream 12901 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012483 mRNA upstream 28952 19461291 ~ 19467495 (+) True AMCG00012483
AMCG00012480 mRNA upstream 146245 19334696 ~ 19350202 (+) False AMCG00012480
AMCG00012481 mRNA upstream 163020 19300813 ~ 19333427 (+) True AMCG00012481
AMCG00012479 mRNA upstream 202351 19277716 ~ 19294096 (+) True AMCG00012479
AMCG00012487 mRNA downstream 17850 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012488 mRNA downstream 27216 19528472 ~ 19531808 (+) True AMCG00012488
AMCG00012486 mRNA downstream 36290 19537546 ~ 19541766 (+) True AMCG00012486
AMCG00012493 mRNA downstream 57398 19558654 ~ 19581439 (+) True AMCG00012493
AMCG00012492 mRNA downstream 116482 19617738 ~ 19627369 (+) True AMCG00012492
TU172360 other upstream 257489 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 322026 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 951957 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1108141 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1362066 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 313669 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 389911 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 829825 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 929669 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 929780 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile