RNA id: AMCG00012493


Basic Information

Item Value
RNA id AMCG00012493
length 4836
RNA type mRNA
GC content 0.60
exon number 17
gene id AMCG00012493
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19558654 ~ 19581439 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCGAGACGAGGTCAAGACCTGGAAAGGGAAAACCACAACATCGGAAATGGCCCTCCTGCTTCTGCTGTGTGCCATCTGTCCCATCATCCACGCATCGCCCCTGAACTCCGGCCTGGTCCCAGATGACATCCAGCTGCTGCAGGTGAGGATCCCCACGTACCCCCCTGCGGTCGCCACTCTGGGCGGGTCCCTGACCCTGCCCTGCCATGTCTCCCATGGTCAGCCCACCCCCCTCACCGCGGGCCGCCGGGCGGTGCTGACCGCCCCGCGCGTGAAGTGGACCGTCATCTCCGGGGGCCGCGAGACTGAAATCTTAGTGGCCAGGGGTCAGAGGGTGAAGGTCAGCGAGGCCTACAGGGACAGAGCCTCCCTGCCCAACTACCCCTCCTCCCCCGAAGACATCACCCTGCTTCTGGACTCACTCCGGTACAACGACTCTGGGATCTACCGCTGCGAGGTGCAGCAAGGCCTAGAGGACAACCATGACCTGGTCCGCgtcaaggtcaaagGTGTGGTTTTCCACTACCGGGACGCCTCCCGACGCTATGCCTACTCCTTCGGTGAAGCCCAGCAGGCTTGCGCAGACATAGGTGCCCACATCGCCAGCCCCGACCAGCTCCTGGCGGCCTACCACAGCGGCTACGAGCAGTGCGACGCGGGCTGGCTCGCAGACCAGACCGGTTGCTATGGTGACATGGACGGCTTTCCGGGCGTACGCAACTATGGCACCCAGGACACCCAGGAGCTCTACGATGTTTACTGCTACGTGGAGAACCTAGATGGGGAGGTGTTCCATGGCGATTCCCCATCCAAGCTGACCCTGGAGGAGGCCAAGGAATACTGCGCGGCGCGGGGGGCGGGCCTGGCCAGCACAGGGCAGCTGTACGCGGCCTGGAATGACGGTCTGGACCACTGCAGCCCCGGCTGGCTGGCGGACGGCAGCGTGCGGTATCCCATCGTCAGCCCCCGGGAGCGCTGTGGCGGCTCCCAGCCCGGGGTCAAGACGAGTTTAGGAAACACGGGCTGGAATAGAAATTTTAGAGAGCTGAAAAACAACGGAGGCAACGGGGTCTCCCACACCGAGTCCCCCATGGACTACCGTGCCACAGAGCCCGAGGATCTGGGCGATATCGTCACGCTGACAGACCCGCTGGAGGAGTTCGGCCTAGACCAGCACGGGGAGGAGTGGGAGAGCGAGGCCAGGGGCAGCTTCGACCAGTTCTCGGTCTTCGAGGATCCCATTGTGAGGGAGCAGGGCCTGGGGCAGCAAGGCCTACCACAGCTCTCTGTCACGGCTGTGGCCCAGGCAGAGTACCTTTACCCCACCACCTCAGAGAATGATATCACACCTGCCCCTGTGACTCAGTACCCCCAGTCTACAGATGCCACCTGGCACATTGTCCATGAGGGTAACCCCAAACACTACCAGCCAATGCCAGAGACCAACTTTGAGTTTCCAACCCCCTCCCACAAAGTATCTGGTGGCAATCCTAAACACTACCAACCCATGCCGGACACCAATACAGAATCCCACGAGGCAACAGGTGTAGAATCCTCAAGTGTTCTGGCCCCTTCTTCTAGAGAGTCGGGGGGCAATCCCAAGCACTACGCCCCTATGCCCGAGACAAATCTGCAGTCCGAGGAGCCCACACCACACTACGACACCTCGGTAGAAAATCCCAAGCATTATGAGCCCATGCCTGGATCGGAGTCGTACGACATGTCTGGAGGGAACCACAAGCACTATGTGGACATGCCAGAAACAAATATGGAGTCTGGTGTGACCACAGTGCATCATGGCCCCTCAGGAGATGTTCCTAAACAGTATGATGCTGTACCAGGGACAGGGAATGATTCTAGTTACCCTACCCCTTCGTCCGAAGAATCTGGGGGTGGTGCCAAGCACAATGATGCCATTGCCGGAGCCAGCGTGGAATCGTCAGTCTCTGCTGTCACCCTTCCACAGGAAACGGGAGTGGATATTTACCTTCCAAAGGCCACCCCCTTGCCTGACCTTGAGAGCACCCCTGTCGTAACCACACAGGAGGAGTCTGGAGACCTGAACGCCGCTTCCCAGATCCCAGAGCTGTCTGTGCCAGCAAGCAGCTGGGATAACGTGGGGGTCCAGCCTGATGGGGGGGTTTCATCCGTGGTGGAGTCTGGGGAGCATCCGGTCACCCATTACCCTGTGGACTTCGATGGCTCGGGACCCGTACAGCGCACCCACAGTTCTCAACATGGTGACAGCTCCACCCCTGAGCATTCTGGCTTGCCCTGGCCGGACTCCTCTGCTCCAAAGAACCAAGAGCAGGAGGCCAGTGGAGCGTCAGTGGAGATGCCGGTGCAGGCATCGACAGAGGCACCAGTGGACCTGGGCAGCCCTGTTAACCTGGGGTCATCACCCATTGAAGTGACTGAAAACATGGTCACTGTGACCCTGAAACCAGGCGCAAGTACAGAGGAGGCCAGTACTGCTCGACCGTCTGTGTCAGGCGAGCACGAGGAAGAACAGCCCAGCGGCATCCCAGTCACCCTCCTCACCTCCCCAACCCTGTTCACCCAGCCGACCCTGCCGTCCTCCCAGTGGTCTGCGGAGGCCAAAGCCAGCACCCCCAATGAGTTTGACACCCATGTTCCCGAGGCTAGTGTCCCATCCGGGCAGAAGCAGTCAGGGCTTGAGCACCACGAAGGTTCGGTGGATCTCGTGGGCTTGGACCGGACCCTTGATATTGTGTTCCAAACAGTGGCTCCTCCTGACGCCATCACCTCTGCCTTGGAGGGCAGCCTGGAGCTGGAGTCCGAGATCTCCCCGGCCGGACCCTTAGAGTCAGAGCCCTCTGGTGACCTCCTCAGCCCAGTCCAGGAGCCCACTTCCATTTCCGAAGAGATTCACCTGGACTCTGCAGAGGGCTCGGCGATCACGGACTCCCCGGATCTTCCCTACAGCACCGTGACACCCCTGCTGCTGGATTTCACCGTAGCAGCTTACAAGACATCTGCAACTTCCAGTGCGGACCTCTTGCCTCTTCCCTCCGGCACTGCCTCTGCCCATGGGGAGGACAGTGTGCTAAGCATTGGCAGCACAACCGAGCCTTCTACCACCCAAATAATGATCACCCTTTTGCCTGAGGAGACAGGCACGCCAACATGGGATTCCGATACACCCACTGTGCCCCAGGAATCCCGGATGGATTTGGAATACAGCGGGGAGCACCCTGCTTCTACTGAGGCTCACCTCCCAGAAGCCTCtgctgagcctgacctccttgaACCCACTGCCGCGGGATATCCCACAACCGCCACAGTGCTGTGGCCTCTTTCTACCCAGAGCCCTTCCACTTCTGCCCTGGGGCTGCCCACGTCCGAATCGACCACCCCAGTTTGGGAGACGGAAACCGAGACTACCAACACCCCCCCACCGCTGGTCGGCACTTCCCAGGCTGAGTATGAGCCCATGACGGAGGCTGGGCCTCGCACCCGGCAGCCCACACTACCTGCCTTGCCCACTGAAAGGGCAGTGCTAGGACGGGCGGCAAACATTTCAGTGGCAGCACTGGCCCATCATACACTGAAGGATCCAGGAATTGTGGGGGGGGAGGTGATTGCAGTGCTTGGCTACTCAGACAAGCCATTGATGCCGAATTCAGCCCTGATAAAAGGCTTTGGTGGGGTGTATGGAGTGGGGTACGGCCACAGCTTTAGGGTCACAAAGATTGGGGTGGCGAGCTCTGGCCCACGTCTAGTGTGCAGCGTGCTGGTGGGAGACGCGGCATATTCCCGACGCGTTCCCCCTCCACCTCCACTGGCAGGGCTGTGCCAGTATTGCCCCCACTGTCACTGTGTTTCAGACGCCTGCCTGGAGAACCCGTGTGCCAATGGGGGCACCTGCGTGGAGGATGGGGTGTCAACCAAGTGCCTGTGTCTGCCTACCTATGGAGGGGACCTCTGCCAGACTGACCTGGAGCACTGCGAGGCGGGCTGGGAGAAGTTCCACGGCTTCTGCTATAAGCACTTCAGTAATCGCCAGGGCTGGGAGGTGGCAGAGCAGCACTGCAGGATGTGTGGCGGGCACCTGGTCTCCATCATGACCCCCGAGGAGCAGGACTTCATCAACAatAAATACAAGGAGTACCAGTGGATGGGGCTGAACGATAAAACCATTGAGGGGGACTTCCGCTGGTCTGACGGAAACCCGCTGCTCTACGAGAACTGGTACCGTGGCCAACCCGATAGCTACTTCCTGTCTGGGGAGGACTGCGTGGTGATGGTGTGGCATGATGGAGGACGCTGGAGTGACGTGCCCTGTAACTACCACTTGTCCTACACTTGCAAGAAAGGCACCTCGTCGTGTGGAAAGCCCCCCCAGGTGGAGAACGCAGGGACGTTCGGGAAGCCACGCCAGCGCTACGAGACCAACTCAGTGGTGCGCTACCACTGCGCCCAGGGCTTCCTGCAGAGACAGAACCCCCTGGTCAAGTGCCTACCCAACGGCAGATGGGAGGAGCCACAGATTGTCTGCATCCCGGGTGTCGGGCCTTATAAGGTCAACTGCACCGAGGAAGCGGGGGACGAAGAGCAGGACCCCGACAAAAAGAAGTACAAGAAGGCGTGCTCTGGAGTGGACTCGGATGGGAGCAAAGGAGAGGACGAGACCTCCCAGAGCgagaatgagaatgagaatgagagcgagagcgagagagagagtgagagtgagagtgagagcgagagcgagCTGGACCATGAGGAAGAGTGCTCCAGCTGTTCCGACAACAGCAATCCGGCTCCCTCTTCCGAGACGATGTCGGAAAGCAACTCAAGCCTCAGCTCCTAA

Function

GO: NA

KEGG:

id description
K06795 BCAN; brevican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172454 lncRNA upstream 49456 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA upstream 49795 19504883 ~ 19508859 (+) False G137177
TU172428 lncRNA upstream 133116 19423553 ~ 19425538 (+) True G137155
TU172414 lncRNA upstream 162901 19361344 ~ 19395753 (+) True G137144
TU172394 lncRNA upstream 209597 19332328 ~ 19349057 (+) True AMCG00012480
TU172478 lncRNA downstream 78307 19659746 ~ 19689785 (+) True G137196
TU172544 lncRNA downstream 207548 19788987 ~ 19793532 (+) True G137242
TU172572 lncRNA downstream 309728 19891167 ~ 19895599 (+) True G137265
TU172654 lncRNA downstream 583844 20165283 ~ 20228036 (+) True G137332
TU172659 lncRNA downstream 588987 20170426 ~ 20237873 (+) True G137337
AMCG00012486 mRNA upstream 16888 19537546 ~ 19541766 (+) True AMCG00012486
AMCG00012488 mRNA upstream 26846 19528472 ~ 19531808 (+) True AMCG00012488
AMCG00012487 mRNA upstream 34972 19519106 ~ 19523682 (+) True AMCG00012487
AMCG00012489 mRNA upstream 57398 19496447 ~ 19501256 (+) True AMCG00012489
AMCG00012484 mRNA upstream 75108 19476382 ~ 19483546 (+) True AMCG00012484
AMCG00012492 mRNA downstream 36299 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012495 mRNA downstream 181564 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012497 mRNA downstream 236080 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012496 mRNA downstream 270714 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012511 mRNA downstream 551883 20133322 ~ 20134653 (+) True AMCG00012511
TU172360 other upstream 319696 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 384233 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1014164 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1170348 18385289 ~ 18388306 (+) True G136864
TU171980 other upstream 1424273 18132407 ~ 18134381 (+) True AMCG00012439
TU172558 other downstream 233486 19814925 ~ 19815617 (+) True G137252
TU172571 other downstream 309728 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 749642 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 849486 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 849597 20431036 ~ 20440670 (+) False AMCG00012521

Expression Profile