RNA id: AMCG00012496


Basic Information

Item Value
RNA id AMCG00012496
length 1535
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00012496
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19852153 ~ 19856703 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caacacTCTACTTACAAGTCCGTAGCCCTGAGCAGCACTCCACACTGCTGATGTGCTCAGATGTTTCTCCACAGCTGCCAGAGGACTGACCTCAGCTGCCGGTCTGCGCAGTTtgttcccatcactcactctgcttcctcctctccccctgTCCCTGCTCTCCCTGCAGGTGCCTGTGCTGGTGTTTGTGCCCCGGTTTGCTTCGCGATGGCGGGGAGAGCCCGGGGGCGAGGCCGGGGGCAGATGAATTTCAACATGGAGGCTGTGGGCATCTGGAAAGGGGACCTCCTGCCCCCTTCCACCCTGCAGCCCACTCCACTGTTCCCCCCGATGGAGTACAAGCCTGTGCCCCTGCAGACGGGCGAAGAGGCGGAGTACATGCTGGCACTGAAACAGGAGCTGCGGGGGGCCATGAAGAACCTGCCCTACTTCGTGAGGCCCGCCGCCCCCAAGAAAGACATAGAGCGCTACTCTGACAAGTACCAGAGCTCGGAGCCCACGGACAACACCATCGAGTGGAACCCAGactGGAAACGGCTGCCCAGAGAGCTGCGCATCAGAGTACGGAAGCCCCTAAAGGACAAGCCTCCCGCCGCTCCCAAGCGCAGTCAGCACACCCGGGTGGACAAGGAGGAAATCATCCGCAAACTGGAGGTGAGGgattgttttttccccacgCTCCAGACCCTGGAGAAGAAGGAGCAGGAGGTGAGctcagaggaagaggaggaggagaagaagcaggaggaggaagagcaggagaatgAGGAAGAGTACGACGAGGAGGAGTTTGAGGAGGAGACGGACTACATCATGTCCTACTTTGATAACGGGGAGGACTTTGGGGCGGACAGCGACGACAACATGGATGAAGCCATCTACTGAGGGGAGCCAGAGAGACAGGGACCCGGGACCGGGGCGCAGGGGGACACAGCACTTCACGGAGGGACCTGGAATAGTCTGTCTGGGACAGAGAGACACCTGGGGGTGGAACACAGAGGTGCAGAAGGCAACACTGTCCCCGGATACACAGTCGcacttatttatcaatgtttTAGGTTCACGTTGGtggagtaaaaaaacaacaaaaaaaaaggacacGAGCGTTTCACCCCAACGGACTTTGTGGGGGGGTTGACCATTTTGGCGCGAGGGGACAGGGGTGTGAAACCTCCTGTCATCTCTCTCTTCAGTGTTGCTGAGATCCTCTTGCACTGAGGGACCAGAGTGCTGTTCTATCACCCAGAACAGGTTCCTGACAgaattttacataaaaatgaaagaaaaggacaatatttttttattttttgtaacggTTTTAtcgtgtgttttttaaatggaagtTGCTGTTTTAGGAAGTGTGGTTTTAAGGTCGTTTTAAAGTTTGTTAAACTCCGAGAGATTCTGATGTCATTCTCAGTGACTACAATGCTGCCACCCGCCACCAGGGGGAGCTGCCGtccttgttattgttttaaattgttcttcTGCCGATGTTGATATTTTGGGAGTCTGTGGCGCATATCAATGTAAAC

Function

GO: NA

KEGG:

id description
K03024 RPC7, POLR3G; DNA-directed RNA polymerase III subunit RPC7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172544 lncRNA upstream 58621 19788987 ~ 19793532 (+) True G137242
TU172478 lncRNA upstream 162368 19659746 ~ 19689785 (+) True G137196
TU172454 lncRNA upstream 342955 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA upstream 343294 19504883 ~ 19508859 (+) False G137177
TU172428 lncRNA upstream 426615 19423553 ~ 19425538 (+) True G137155
TU172572 lncRNA downstream 34464 19891167 ~ 19895599 (+) True G137265
TU172654 lncRNA downstream 308580 20165283 ~ 20228036 (+) True G137332
TU172659 lncRNA downstream 313723 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA downstream 320378 20177081 ~ 20237873 (+) False G137337
TU172672 lncRNA downstream 344848 20201551 ~ 20201804 (+) True G137348
AMCG00012497 mRNA upstream 25890 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012495 mRNA upstream 64511 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012492 mRNA upstream 224784 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012493 mRNA upstream 270714 19558654 ~ 19581439 (+) True AMCG00012493
AMCG00012486 mRNA upstream 310387 19537546 ~ 19541766 (+) True AMCG00012486
AMCG00012511 mRNA downstream 276619 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012513 mRNA downstream 369695 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012514 mRNA downstream 383131 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012512 mRNA downstream 397647 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012517 mRNA downstream 426546 20283249 ~ 20291367 (+) True AMCG00012517
TU172558 other upstream 36536 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 613195 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 677732 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1307663 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1463847 18385289 ~ 18388306 (+) True G136864
TU172571 other downstream 34464 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 474378 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 574222 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 574333 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 1199992 21056695 ~ 21059263 (+) True G137583

Expression Profile