RNA id: AMCG00012497



Basic Information


Item Value
RNA id AMCG00012497
length 900
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00012497
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19817519 ~ 19826263 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCGAGACAAAGGGGTCATATACGGTTAAGGGTACTCTCTATTGTAATTTCTCGAAAACCATGTTATCAAATTGTCTATGTGATAAGGAGAGGGGAATTGTGGGTGATTTAGATTAGGTGGCCTTTGCTATAAGGGATATAAATTACCAAGAAAGGTGGTGTGTTGAGATTACATTGACGTGGAGTTATGGAGGTTGGGCTCCAAACTTATAAGGGGACCCACTgcaacagaaagagagagagggagcgtgagagagagaaggaacgAATCTCCCACTTGCCACTTCCCACTTAAGtAGGAACATACCTCCATCTCATCTCCTGAAAATGTCCAGCCCAGGCTACACCCCCAGTGGAATGGTTTTCACACAAAACCATACTGCTCCCACTGCCTTCGTGTCCAACCCCCCTTCTCACTTGAAGAAGTTCCTAAATGGGCAGCCCAAAATCCTTGGGTACCTCACCTCTGGGTCCCTCTGCATTAAAGCCGCCACACAGCCCAGCCGATCCCAGGGTAAGACTTTCGGCATCAAAGGAGTGTTGGTGGTGCTCTCCcttctgcagctctgtgtcTCCATCTTGGCCTCGGCCTTCGGCTGCAAAGCTGTCTGCAACAACTCTGAGCTTGTGGTGGAGTTTCAGAACTACAGTGTGACCAGTCCGCAATTTGGCACAAACCTGAACACCCAGCTCAGCCCAGCTCAGGGATACCAACCCAGCCCAGCTCAGGGATACCAACCCAGCCCAGCTCAGGGATACCAACCCAGCCCAGCTCCGGGATACCAACCCAGCCCAGCTCAGGGATGCCAGCACTGCACCTGCACAGTGCCCCCACAGGGGCAGAACCTCATGCTGCCAACAACCTTCAAGATTACTCTGGGGATTACTCTGCTCCTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU172544 lncRNA upstream 23987 19788987 ~ 19793532 (+) True G137242
TU172478 lncRNA upstream 127734 19659746 ~ 19689785 (+) True G137196
TU172454 lncRNA upstream 308321 19504883 ~ 19509198 (+) True G137177
TU172456 lncRNA upstream 308660 19504883 ~ 19508859 (+) False G137177
TU172428 lncRNA upstream 391981 19423553 ~ 19425538 (+) True G137155
TU172572 lncRNA downstream 64904 19891167 ~ 19895599 (+) True G137265
TU172654 lncRNA downstream 339020 20165283 ~ 20228036 (+) True G137332
TU172659 lncRNA downstream 344163 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA downstream 350818 20177081 ~ 20237873 (+) False G137337
TU172672 lncRNA downstream 375288 20201551 ~ 20201804 (+) True G137348
AMCG00012495 mRNA upstream 29877 19763003 ~ 19787642 (+) True AMCG00012495
AMCG00012492 mRNA upstream 190150 19617738 ~ 19627369 (+) True AMCG00012492
AMCG00012493 mRNA upstream 236080 19558654 ~ 19581439 (+) True AMCG00012493
AMCG00012486 mRNA upstream 275753 19537546 ~ 19541766 (+) True AMCG00012486
AMCG00012488 mRNA upstream 285711 19528472 ~ 19531808 (+) True AMCG00012488
AMCG00012496 mRNA downstream 25890 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012511 mRNA downstream 307059 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012513 mRNA downstream 400135 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012514 mRNA downstream 413571 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012512 mRNA downstream 428087 20254350 ~ 20270919 (+) True AMCG00012512
TU172558 other upstream 1902 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 578561 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 643098 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1273029 18539545 ~ 18544490 (+) True AMCG00012460
TU172065 other upstream 1429213 18385289 ~ 18388306 (+) True G136864
TU172571 other downstream 64904 19891167 ~ 19895599 (+) False G137265
TU172707 other downstream 504818 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 604662 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 604773 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 1230432 21056695 ~ 21059263 (+) True G137583

Expression Profile