RNA id: AMCG00012498


Basic Information

Item Value
RNA id AMCG00012498
length 1656
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00012498
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19828500 ~ 19830155 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTGACGGGGGGGCCCTCCACACTGAGGGGAATGCCCTTCTTAAGGCTGTGTTCCAGGGCAGGCTGCGGCTGACCCGGTTGCTGTTGGAGGGGGGGGCGTACATCAACGAGGGCAATGAAAGGGGGGAGACGCCCATCTCGGCCGCCTGCCTGGCTGGCTACGAGGATGCGCAGAGCCAGCAGAAGATGGTACGCTACTTGCTGGAAAAGGGCGCTGACCCCAACATCCCCGACAAGTCCGGGCGCACAGCTCTTATGCACGCCTGTGCGGAACAGGCTGGCAAGGAGGTAGTGTCCCTGCTTCTGGAGTACGGGGCCGATCCCAGCCTGAAGGACTACTCAGGGTCCTCAGCCCTGGTCCACGCCATCAACCGGGGGGACCGTGAGACGCTGCAGATCCTTTTGGACGCCTGCAAGGCCAAAGGCAAGGAGGTTATCATCATCACCACAGACACGTCCCCCTCAGGCACCAAGAAGACCAAGCAGTACCTCAACTCACCACCCTCACCCGGCATCGACGACAAACTCTCCCCCGTCTCCTGCATGTCACCCTCTGAGGTGGAGATCCGCACCACCGCGTCCCCGGCTAGCgagaaagaagaagaggagggcATCTTTAGCTTTGCCCTGTCGACTGCTCTCCCCCTGCCTTCCGCCCGTCCCCTGGGGGAGAAGAGGGCACCCCCACGCAAGCTCCTCAAGAGGCTCAATTCGGAGCCGTGGGGGCTGGTGGCGCCCTCTGTGCTGAGCGCGGCAGCCCAGGAACAGCCCCccagggagggggagagggaagtAGTGCCTGGGGTGGAGGAAGAGACAGAAGAGCGCCTCCTCTCCGAGATGAACGGCCTGTGCGTCTCTGGGCCTGGCAGGCCCCTTCTTTCACGACGGCATAGCATCGAGACCCACGACCCCATCTCGCCCAAACTCAAGGACCGCTCGTGCTCCGAGGACTGTGCTGCACTCTATGGCTCCTCCTGGGCTGACAAGGTCCAGCAGCACCAAATGCTGTACCGCAGGAACACAGCCCCCGAATCGCAGGAGACAGCCGGCACGGGCCCGGGAATGGTGCCCGGACCAGGAGCGGGTTCAGGACCTGTGCCGGTGGGAGCCCGGGGATTGGCGCACCCCAAGCTGACTCGCATGGAACACTACGAATCGGACACCCACCTGTGTCCCGAATCCATCCCCGGCTCCCCTGATTCGGGAAGGGTATCAGTGGAACGCCGCAAGTACAATGcctcccccctctccctgctCACCAGCTCCTCCCGGGAGTCCCTGGAGAGCATTCCCAACTCAGTGTCGCCCATCACTGTCCGCCGGAGACCCCCGGGGCTGCTGGAGCGCAGGGGCTCTGGCACCCTTCTCCTGGACCACATCTCTCACACTCGGCCAGGCTTCCTACCCCCACTCAACATCAACCCCCAGCGGCCTATCCCAGACATCCGGGCCAACGGAAAGCCACCGTCCCCTGTCCACACGGGACACAAGATCCTGATCCCGGTGGCGCCCAGCTCCCCCAAGCGCGGTGATTCCAAGCTGAAGAAGAAGCTAACGAGGCGCCACTCAATGCAGCCCGAGCAGATGAAGCAGCTCTCCAGCTTTCAGGAGGTCCTGACGGAGAAGATGATCGAATTCACAGGGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172553 lncRNA downstream 54414 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 193433 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 206055 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 319302 19504884 ~ 19509198 (-) False G137214
TU172337 lncRNA downstream 647142 19179139 ~ 19181358 (-) True G137094
TU172579 lncRNA upstream 70051 19900206 ~ 19900440 (-) True G137270
TU172738 lncRNA upstream 336920 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 371409 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 379412 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 546288 20376443 ~ 20377953 (-) True G137449
AMCG00012499 mRNA downstream 14670 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012494 mRNA downstream 238236 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012491 mRNA downstream 291395 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012490 mRNA downstream 310752 19510237 ~ 19517748 (-) True AMCG00012490
AMCG00012485 mRNA downstream 411224 19415947 ~ 19417276 (-) True AMCG00012485
AMCG00012500 mRNA upstream 60988 19891143 ~ 19895768 (-) True AMCG00012500
AMCG00012503 mRNA upstream 72951 19903106 ~ 19906610 (-) True AMCG00012503
AMCG00012502 mRNA upstream 85657 19915812 ~ 19931090 (-) True AMCG00012502
AMCG00012501 mRNA upstream 104704 19934859 ~ 19947563 (-) True AMCG00012501
AMCG00012505 mRNA upstream 197192 20027347 ~ 20033065 (-) True AMCG00012505
TU172548 other downstream 34969 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 34969 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 321106 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 785051 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1450203 18375330 ~ 18378297 (-) True G136900
TU172597 other upstream 74267 19904422 ~ 19910378 (-) False AMCG00012503
TU172771 other upstream 430847 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1205008 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 1209934 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1603509 21433664 ~ 21618770 (-) True AMCG00012559

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022016 True 4927 lncRNA 0.43 2 NC_007127.7 42795604 ~ 42800731 (+)