RNA id: AMCG00012503


Basic Information

Item Value
RNA id AMCG00012503
length 1638
RNA type mRNA
GC content 0.71
exon number 5
gene id AMCG00012503
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19903106 ~ 19910378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATGTCCCCTGTGCCTGGCGGCTCTGCCCTTGCTGTTTCCCCCCATGCCCAGGAAGAAACATAGCTGTACACGTTCTGGGTTGCCCCGTTTCTGCGTTGCTGGTACCATGGACGGACAGGAATCTTTGTCTTTCTCTGGCTCTCCAGTCCTGCACAGCCCCCAGGCCGTGTTGTGTGCAGGTCCTGTGAGCGCCAGTGAGACGAAGGCCCACACCCCCGGGAACGCCACGCTCGCACACCGAGCATCTCCCCTCTCCGATCAGTGTCGACAGTGCGGCGGGAGACGGCAGGCCCTCCCAGTACGGACCGCAATGTGGGGGCCCGGGGTCTGCTGGAACGGTGTGCAGCTGCCAGGCAGACGTGCCCTCGTCCTCGTGTGGCTGATCTCACAGCTGTGCAGCGCGCCAGcGTGGGCACAGTGTCGGATCCTCAGGTGTAACTCGGAGTTTGTGGCGGCCGCTCAGGACTATGGGGGAGGTGGCGAAGGTGGTGCAGGAGAGCGGGAGGGGAGCCACCAGCACACGGGGTACTGCAGCGCCCTGCGCTCCTATGCCCAGTGCACCCGCCGCACCGCCCGGGCCTGCCGGGGGGACCTGGCCTTCCACTCGGCCGTGCAGGGCATCGAGGACCTGCTCATCCAGCACCGCTGCCCCAAGGCCGGCCCCGGCGCCCCGCCCCGACCCCCGCCCCGGCCCCGCCCCGCCCAGGCCCCCCTGCCCGGCGAGGCCTGCAGCTACGAGCGGGCGTACCTGCAGCGCGAGGGCCGCCCGCCCAGGTTCCTGCACTGTGGCGTGTTCGGGGACCCCCACGTGCGCACCTTCCGGGACGAGTTCCAGACGTGTGCGGTGCCGGGCGCCTGGCCACTCATCGACAACGAGCACCTGTACGTGCAGGCCACCAGCGCCCCCGCCCGACCCGGCTCCCCGCCCACCGCCGCCGCCCTCACCTCTGCCACCGTGCTCACCAAGATCACCATCATCTTCAAGGGCTCCCGGGAGTGCGTGGACCAGCAGATCTACCAGGCCGAGCTGGGGGACGTCCCCGCAGCCTTCGTGGACGGGTCGGTCTCGGCGGGCGGGGAGCGGCGGGGGGGGGGCGGCCTGGCGGTGCGGAGCCTGGCCCCCGGGCGGCACGCGGAGATCGTCGCCGCCCACATCGGGGCCACGCTGGTGGTGCGGCAGACCGGGCACTTCCTGTCTCTGGCGGTGCGCGCCCCCGAGGACGTGGTGGGGGCCTTCTCCCCCGAGCAGGACCTGCAGCTCTGCGTGTGGGGGTGCCCCGCGTCCCAGCGCCTggacccccccaacccccatccCCATCCTGCTCCTGCCCTTTCCAACTCTTTCTCCTTGTCCGCCGCCCGCTCCCACTGCGCCCGCCTCCTGCCCACGGAGGACGTCTACTTCCAGGCCTGCGTCTTCGACCTGCTGGCGACGGGCGACGCCAACTCCAGCTCAGCGGCCCTGGCGGCTCTGGAGGACGCCCGGGCGCTGCTGTCGGACACCGAAAGGCTTCACCTCCTGCCCAACCACGCACCTGCCAGCGCAGGCCGCCCCCTGCTCCTCCTGCTGGCCCTCCTAGCCCAGCAGCTCCTGGCAGGGCTTCTCCAGGATGTAGGCCATTTTGCCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172579 lncRNA downstream 2666 19900206 ~ 19900440 (-) True G137270
TU172553 lncRNA downstream 129020 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 268039 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 280661 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 393908 19504884 ~ 19509198 (-) False G137214
TU172738 lncRNA upstream 260465 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 294954 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 302957 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 469833 20376443 ~ 20377953 (-) True G137449
TU172844 lncRNA upstream 516777 20423387 ~ 20423680 (-) True G137472
AMCG00012500 mRNA downstream 7338 19891143 ~ 19895768 (-) True AMCG00012500
AMCG00012498 mRNA downstream 72951 19828500 ~ 19830155 (-) True AMCG00012498
AMCG00012499 mRNA downstream 89276 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012494 mRNA downstream 312842 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012491 mRNA downstream 366001 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012502 mRNA upstream 9202 19915812 ~ 19931090 (-) True AMCG00012502
AMCG00012501 mRNA upstream 28249 19934859 ~ 19947563 (-) True AMCG00012501
AMCG00012505 mRNA upstream 120737 20027347 ~ 20033065 (-) True AMCG00012505
AMCG00012504 mRNA upstream 130325 20036935 ~ 20060267 (-) True AMCG00012504
AMCG00012506 mRNA upstream 196704 20103314 ~ 20107248 (-) True AMCG00012506
TU172548 other downstream 109575 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 109575 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 395712 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 859657 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1524809 18375330 ~ 18378297 (-) True G136900
TU172771 other upstream 354392 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1128553 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 1133479 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1527054 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 1590069 21496679 ~ 21502199 (-) True AMCG00012556

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_03233523_03240000.mRNA True 1355 mRNA 0.58 4 CI01000027 3233523 ~ 3240002 (+)