RNA id: TU172597


Basic Information

Item Value
RNA id TU172597
length 468
RNA type TUCP
GC content 0.66
exon number 3
gene id AMCG00012503
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19903106 ~ 19910378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACATCTCACCCATCCGACAGTTTAGTTGAGAGGGGGACGACGTGCAGAGAGACAGGACACGACAGAGACACCGGTCAAGTCACCCTGCAGTGGACACTACAGAGGTGGTCATGGGTGTGCAGTGCAGATCAGTGTCGACAGTGCGGCGGGAGACGGCAGGCCCTCCCAGTACGGACCGCAATGTGGGGGCCCGGGGTCTGCTGGAACGGTGTGCAGCTGCCAGGCAGACGTGCCCTCGTCCTCGTGTGGCTGATCTCACAGCTGTGCAGCGCGCCAGcGTGGGCACAGTGTCGGATCCTCAGGTGTAACTCGGAGTTTGTGGCGGCCGCTCAGGACTATGGGGGAGGTGGCGAAGGTGGTGCAGGAGAGCGGGAGGGGAGCCACCAGCACACGGGGTACTGCAGCGCCCTGCGCTCCTATGCCCAGTGCACCCGCCGCACCGCCCGGGCCTGCCGGGGGGACCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172579 lncRNA downstream 3982 19900206 ~ 19900440 (-) True G137270
TU172553 lncRNA downstream 130336 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 269355 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 281977 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 395224 19504884 ~ 19509198 (-) False G137214
TU172738 lncRNA upstream 256697 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 291186 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 299189 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 466065 20376443 ~ 20377953 (-) True G137449
TU172844 lncRNA upstream 513009 20423387 ~ 20423680 (-) True G137472
AMCG00012500 mRNA downstream 8654 19891143 ~ 19895768 (-) True AMCG00012500
AMCG00012498 mRNA downstream 74267 19828500 ~ 19830155 (-) True AMCG00012498
AMCG00012499 mRNA downstream 90592 19803626 ~ 19813830 (-) True AMCG00012499
AMCG00012494 mRNA downstream 314158 19586764 ~ 19590264 (-) True AMCG00012494
AMCG00012491 mRNA downstream 367317 19533480 ~ 19537105 (-) True AMCG00012491
AMCG00012502 mRNA upstream 5434 19915812 ~ 19931090 (-) True AMCG00012502
AMCG00012501 mRNA upstream 24481 19934859 ~ 19947563 (-) True AMCG00012501
AMCG00012505 mRNA upstream 116969 20027347 ~ 20033065 (-) True AMCG00012505
AMCG00012504 mRNA upstream 126557 20036935 ~ 20060267 (-) True AMCG00012504
AMCG00012506 mRNA upstream 192936 20103314 ~ 20107248 (-) True AMCG00012506
TU172548 other downstream 110891 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 110891 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 397028 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 860973 19032603 ~ 19043449 (-) True AMCG00012472
TU172106 other downstream 1526125 18375330 ~ 18378297 (-) True G136900
TU172771 other upstream 350624 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 1124785 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 1129711 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1523286 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 1586301 21496679 ~ 21502199 (-) True AMCG00012556

Expression Profile