RNA id: AMCG00012506


Basic Information

Item Value
RNA id AMCG00012506
length 2228
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00012506
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20103314 ~ 20107248 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGAAGCAGTCGGTCAGCAGCACGGAAGTAAACAGTTCCACTTCCCGTCAGCCTGTAACTAACTCGGAGAGCTACCGACATGAATGGACTTTCTCTTTTAGATAAGAAAGGGGAGTGCACTCGGGTATGGTTAGTCTCAAATATTAActctatatatgtgtatttgaaTCCTATGTGTTTATGTGACTGACGGCTCCATCGACGGAGAGCGAGAAGGGTCATGTATAGTTCATTAGTTgtcagtatacagtatacagtatagtGTTTGCGCAATAAAGGACCGTGTCCGTCATTGAAAGTTAATGACACAACgggatgaaaataaatgtacttaatCTGGATTGAAAAGTGCAGTGGTTGCGTCTTTATCACAGATTTtggcagttctgcacagatcggCAACTTTGAACCAGTTTTATGCAATTTGCAGGTCtgcgcaaaactgcggaaatctgctcTACAGAAACCGAAATATCGTTAGCAGTGGTACAATGTCTGTCTTGGCACGATAAACAGATTTCACTTTAGTCGTggtcaattaaatgtatagagGTTGCGTTCTTGTAACCCAGACTTCATTAGTTCTGtgcaatgggatcagtggaaatcagcagatctgcgcagaacttaGGGACCGCAACTCTTTTAATGGGTCACCGTTGCCAGTGAGTGTCAACGTGTCTGTGCGCAGCAGCGGGCGGGAGTGCGGGCCATGGAGGCTGTGAAGAAGGTGCTGGTCTACCTGTCCGAGGGAAACTCGGTCCCTCAGTGCGCTCGCTTTGTGCAGAGCATCACGGGACACTTCCCAGGCTGCCATGACGACCAGGTGGAGGTGGGCTGCACGCTGGAGAGGAACTGCTTCGTGGTGTCGGCGGGCGAGAGGGAGGGCGCCACCAGGGTGCTGCTCAGGAGAGCTCCCTTCTGCTCCTTCAAGCACCTGTCACTCTCCGAGGCCGCCACCCTCCCACAGGACGTCCAGAACCGAGGTGTGGACGTAGGCGTGGCCATCCTGCTGCAGACGGCCGATCAGAAGGTGTTGCTGACGCGGCGGGCGGCCGGCCTGAGGATCTTCCCCAACGTTTGGGTGCCACCAGGGGGTCACGTGGAGCTGGGCGAAGAGGTAGCAACTCCGTCTCCGACCGCAGCCCCTGCTGGGACAGGTCTGGTGTTGGGCTGCTCAGTCCCACCCCTCCAGAGCGTATCAGCGTACCCCCCCATGCTGACCAGAGGGCTGCCACGGCGACACCACATCGTCATCTACATGCTCCTGCGCACCTGCCACACTCACCTGCAACTCCAGTCCAGGCTGCACCCTGACCCCGGGGAGGTCAGTGGCTGTGTGTGGTTGGACACTGCGCTGGTCAGGGCTATTGTGTCTGCTGTGGACGGATCAGAACATTCTGGGACAGCACCACCTGACCTGCCCCTGACAGTCAGCATGTCGGAGGTATCCCTGGAGGGCAGTGTGAGTCAGTCAGCGTTGCCGGTGTCGGTGCTGTTGGGACGGGCTCCGGCATGGGGCGAGGACGTGGAGCGGGTCAGTACCGGCACCAAGTTCGCTCTGGAGCTGTGGCTGGACACACCGAGCACACAGGAGTCCTGCAGGTCAGACACTCCCCTGGACGCCCCCTGATCCCGGCCCACCCAACATCCTGGAGCCCAGCCCCTCCGTTTCCGTCAGTCAGACttctgttgattttttttaaattaaataaaagcaaatatcTGATAAAAGCTGATGTAGTAATGAATGACCACTACCGCCTACCATTTAAAATTCTGTGGATGTTCTATTGAGATATTTACATAATCTCTTTCCGTGTTAAAAATATAGGATGTTGGCTTTATAATGACACTTGCCTGTGATGCAGTTTGCTGTGTTGTCCACAAGGGGGTAAGccatgataataaaataagaggACTCGCCTTTGGGTGTGGACAAGGTAATATGTGTCCGGtttaaacaaaactgttctTGGCCAGCCTGACTATGGTGTACGAGGACATTGTGTACAAACAGGTGACCGGCCTAGATAATAATACTGGTTCAAGTAAAGTTCAGTACAGtccagtgtcttctggtttccAGAATTATTACTATAATTGCTGTGGGTGATAAACATTCTCCGTCACATCATACAAATATTGTACTGTAAGCTACTCTTGTCATgcctgtgtttcttttctttcgtGATTGGTTGACAAATTAAACTCTGTATCCAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172579 lncRNA downstream 202874 19900206 ~ 19900440 (-) True G137270
TU172553 lncRNA downstream 329228 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 468247 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 480869 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 594116 19504884 ~ 19509198 (-) False G137214
TU172738 lncRNA upstream 59827 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 94316 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 102319 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 269195 20376443 ~ 20377953 (-) True G137449
TU172844 lncRNA upstream 316139 20423387 ~ 20423680 (-) True G137472
AMCG00012504 mRNA downstream 43047 20036935 ~ 20060267 (-) True AMCG00012504
AMCG00012505 mRNA downstream 70249 20027347 ~ 20033065 (-) True AMCG00012505
AMCG00012501 mRNA downstream 155751 19934859 ~ 19947563 (-) True AMCG00012501
AMCG00012502 mRNA downstream 172224 19915812 ~ 19931090 (-) True AMCG00012502
AMCG00012503 mRNA downstream 196704 19903106 ~ 19906610 (-) True AMCG00012503
AMCG00012510 mRNA upstream 914 20108162 ~ 20113136 (-) True AMCG00012510
AMCG00012509 mRNA upstream 6646 20113894 ~ 20118565 (-) True AMCG00012509
AMCG00012508 mRNA upstream 40529 20147777 ~ 20157212 (-) True AMCG00012508
AMCG00012507 mRNA upstream 60907 20168155 ~ 20178964 (-) True AMCG00012507
AMCG00012520 mRNA upstream 185482 20292730 ~ 20297061 (-) True AMCG00012520
TU172597 other downstream 192936 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 309783 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 309783 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 595920 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 1059865 19032603 ~ 19043449 (-) True AMCG00012472
TU172771 other upstream 153754 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 927915 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 932841 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1326416 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 1389431 21496679 ~ 21502199 (-) True AMCG00012556

Expression Profile